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BaseInfo

ncRNA ID novel_gma_miR2907
Species Glycine max
Class miRNA
Genome position Chr1:8980964-8981055 [+]
Reference genome Glycine_max_v2.0
Source SRR1451664;SRR1295524;SRR1451615
Length 24
Mature sequence(if miRNA) 69 - AGAGAACCGUCUUAGAAUGUAUUU - 92
Stem-loop(if miRNA) --    UC      A         A UU     C U        U  U
  AUAC  UUCUAA ACGGUUCUU G  AAAAA C UCUUAGAA AG A
  ||||  |||||| ||||||||| |  ||||| | |||||||| ||
  UAUG  AAGAUU UGCCAAGAG C  UUUUU G AGAAUCUU UC G
UU    -U      C         A --     A C        -  A
Stem-loop sequence AUACUCUUCUAAAACGGUUCUUAGUUAAAAACCUUCUUAGAAUAGUAGACUUUCUAAGACGAUUUUUCAGAGAACCGUCUUAGAAUGUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771087.1
ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1
  ||||||||||||||||||||||||
targets:2605   AAAUACAUUCUAAGACGGUUCUCU   2628

0.0 PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA uncharacterized LOC102664939(LOC102664939) coding protein psRNATarget
XM_014771087.1
ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1
  |||*||||||||||||||||||=|
targets:2509   AAACACAUUCUAAGACGGUUCUUU   2532

1.5 PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA uncharacterized LOC102664939(LOC102664939) coding protein psRNATarget
XM_014763138.1
ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1
  |||||||||||||||=||||||||
targets:1523   AAAUACAUUCUAAGAUGGUUCUCU   1546

1.5 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget
XM_006589010.2
ncRNA:24   UUUAUGUAAGAUUCUGCCAAGAGA   1
  |||||||||||||||=||||||||
targets:2232   AAAUACAUUCUAAGAUGGUUCUCU   2255

1.5 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget
XM_003535430.3
ncRNA:24   UUUA-UGUAAGAUUCUGCCAAGAGA   1
  ==||-||||**|||||||||||||*
targets:1554   GGAUGACAUGAUAAGACGGUUCUCG   1578

3.0 PREDICTED: Glycine max uncharacterized LOC100818182 (LOC100818182), mRNA uncharacterized LOC100818182(LOC100818182) coding protein psRNATarget