Search result

BaseInfo

ncRNA ID	novel_gma_miR2873
Species	Glycine max
Class	miRNA
Genome position	Chr7:21597070-21597142 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1294484;SRR1294485;SRR1294487;SRR1292924;SRR1295517;SRR1295518;SRR1295520;SRR1295524;SRR1295525;SRR1295526;SRR1295527;SRR1295530;SRR1292928;SRR1295531;SRR1292929;SRR1294476
Length	24
Mature sequence(if miRNA)	1 - AAGGAGAUGAGCUUAGUUAUGAGA - 24
Stem-loop(if miRNA)	--G             UGG      UA    -U    U    CGUAGCUAAGCUC   CUUCUU  GAAA  CUUC U    |||||||||||||   ||||||  ||||  |||| A    GUAUUGAUUCGAG   GAGGAA  CUUU  GAAG A AGA             -UA      --    UC    G
Stem-loop sequence	GCGUAGCUAAGCUCUGGCUUCUUUAGAAAUCUUCUUAAGGAAGCUUUUCAAGGAGAUGAGCUUAGUUAUGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT090266.1	ncRNA:24   AGAGUAUUGA-UUCGAGUAGAGGAA   1   |*|*|||||*-|||||||||||||| targets:202   UAUGAUAACAGAAGCUCAUCUCCUU   226 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-4E15 unknown mRNA	NA	coding protein	psRNATarget
XM_003542700.3	ncRNA:24   AGAGUAUUGA-UUCGAGUAGAGGAA   1   |*|*|||||*-|||||||||||||| targets:739   UAUGAUAACAGAAGCUCAUCUCCUU   763 Target Full Sequence	3.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
XM_006594256.2	ncRNA:24   AGAGUAUUGA-UUCGAGUAGAGGAA   1   |*|*|||||*-|||||||||||||| targets:774   UAUGAUAACAGAAGCUCAUCUCCUU   798 Target Full Sequence	3.0	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget