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BaseInfo

ncRNA ID novel_gma_miR2863
Species Glycine max
Class miRNA
Genome position Chr20:31280574-31280729 [+]
Reference genome Glycine_max_v2.0
Source SRR1451663
Length 24
Mature sequence(if miRNA) 133 - AUUAAAGCCAGAAUCGUUGUGAUC - 156
Stem-loop(if miRNA) --       A      C        C   A                    CAUA              AC    C UU
  UCGCAAC GUUUUG CUUUAAUU CUA UAGCACCAAAAGAUCAAGUU    GAGGAUGCGAAAGC  UAGG A  G
  ||||||| |||||| |||||||| ||| ||||||||||||||||||||    ||||||||||||||  |||| |
  AGUGUUG UAAGAC GAAAUUAA GAU AUCGUGGUUUUCUAGUUCAA    CUCCUACGCUUUCG  AUCC U  G
CU       C      C        A   C                    ACAC              AU    U UA
Stem-loop sequence UCGCAACAGUUUUGCCUUUAAUUCCUAAUAGCACCAAAAGAUCAAGUUCAUAGAGGAUGCGAAAGCACUAGGCAUUGGAUUUCCUAUAGCUUUCGCAUCCUCCACAAACUUGAUCUUUUGGUGCUACUAGAAAUUAAAGCCAGAAUCGUUGUGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547602.2
ncRNA:24   CUAGUGUUGCUAAGACCGAAAUUA   1
  *|||*|**=|||||||||||||||
targets:87   AAUCUCUCUGAUUCUGGCUUUAAU   110

3.0 PREDICTED: Glycine max uncharacterized protein At4g15970 (LOC100777865), mRNA uncharacterized protein At4g15970(LOC100777865) coding protein psRNATarget
AK285985.1
ncRNA:24   CUAGUGUUGCUAAGACCGAAAUUA   1
  *|||*|**=|||||||||||||||
targets:88   AAUCUCUCUGAUUCUGGCUUUAAU   111

3.0 Glycine max cDNA, clone: GMFL01-19-O01 NA coding protein psRNATarget
XM_006600952.2
ncRNA:24   CUAGUGUUGCUAAGACCGAAAUUA   1
  *|||*|**=|||||||||||||||
targets:106   AAUCUCUCUGAUUCUGGCUUUAAU   129

3.0 PREDICTED: Glycine max uncharacterized protein At4g15970-like (LOC102666668), mRNA uncharacterized protein At4g15970-like(LOC102666668) coding protein psRNATarget