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BaseInfo

ncRNA ID novel_gma_miR2840
Species Glycine max
Class miRNA
Genome position Chr5:10038221-10038324 [+]
Reference genome Glycine_max_v2.0
Source SRR1294484;SRR1451605
Length 24
Mature sequence(if miRNA) 81 - UUUAGAGAACCGUCUUAGAAUGUC - 104
Stem-loop(if miRNA) --    G      A      CG            A  A         AAAAA
  CAUU UAAGAC GUUUUU  AAGAAUUGUCUU GA UUUUUUUAA     U
  |||| |||||| ||||||  |||||||||||| || |||||||||     A
  GUAA AUUCUG CAAGAG  UUUUUAGCAGAA CU GAAAAAGUU     U
CU    G      C      AU            A  -         AAAAA
Stem-loop sequence CAUUGUAAGACAGUUUUUCGAAGAAUUGUCUUAGAAUUUUUUUAAAAAAAUAUAAAAAUUGAAAAAGUCAAAGACGAUUUUUUAGAGAACCGUCUUAGAAUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771087.1
ncRNA:24   CUGUAAGAUUCUGCCAAGAGAUUU   1
  *||||||||||||||||||||=||
targets:2608   UACAUUCUAAGACGGUUCUCUGAA   2631

1.5 PREDICTED: Glycine max uncharacterized LOC102664939 (LOC102664939), transcript variant X2, mRNA uncharacterized LOC102664939(LOC102664939) coding protein psRNATarget