ncRNA ID | novel_gma_miR2838 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr17:9130531-9130756 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451663 |
Length | 24 |
Mature sequence(if miRNA) | 203 - CAUAGUGAUUGAUCAUUGUAAGCU - 226 |
Stem-loop(if miRNA) |
--C                     C    C  A  U          C AU   C                    C       GUAAACUUUAUACCA     GAACUUGCACCCGCCAUU    AUAGUGAUUGAUCAUUGUAAG UAAU UC UU AAUAAUAAUU A  CUU CUUUAUUCUUUUUCUCUUAG UUCUUUA               UCAUA                  U    ||||||||||||||||||||| |||| || || |||||||||| |  ||| |||||||||||||||||||| |||||||               |||||                  A    UAUUACUGAUUAGUAACAUUC AUUA AG AA UUAUUAUUAA U  GAA GAAAUAAGAAAAAGAGAAUC AAGAAAU               UUGAA                  U CGU                     A    C  A  U          A CG   A                    A       ---------------     AGACACGUUCAAAAUAAG |
Stem-loop sequence | CAUAGUGAUUGAUCAUUGUAAGCUAAUCUCAUUUAAUAAUAAUUCAAUCUUCCUUUAUUCUUUUUCUCUUAGCUUCUUUAGUAAACUUUAUACCAUCAUAGAACUUGCACCCGCCAUUUAUGAAUAAAACUUGCACAGAAAGUUUAAAGAAACUAAGAGAAAAAGAAUAAAGAAAGGCUAAAUUAUUAUUUAAAGACAUUAACUUACAAUGAUUAGUCAUUAUUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006602711.2 |
|
3.0 | PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62910-like (LOC100777919), transcript variant X2, mRNA | pentatricopeptide repeat-containing protein At1g62910-like(LOC100777919) | coding protein | psRNATarget |