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BaseInfo

ncRNA ID novel_gma_miR2838
Species Glycine max
Class miRNA
Genome position Chr17:9130531-9130756 [-]
Reference genome Glycine_max_v2.0
Source SRR1451663
Length 24
Mature sequence(if miRNA) 203 - CAUAGUGAUUGAUCAUUGUAAGCU - 226
Stem-loop(if miRNA) --C                     C    C  A  U          C AU   C                    C       GUAAACUUUAUACCA     GAACUUGCACCCGCCAUU
   AUAGUGAUUGAUCAUUGUAAG UAAU UC UU AAUAAUAAUU A  CUU CUUUAUUCUUUUUCUCUUAG UUCUUUA               UCAUA                  U
   ||||||||||||||||||||| |||| || || |||||||||| |  ||| |||||||||||||||||||| |||||||               |||||                  A
   UAUUACUGAUUAGUAACAUUC AUUA AG AA UUAUUAUUAA U  GAA GAAAUAAGAAAAAGAGAAUC AAGAAAU               UUGAA                  U
CGU                     A    C  A  U          A CG   A                    A       ---------------     AGACACGUUCAAAAUAAG
Stem-loop sequence CAUAGUGAUUGAUCAUUGUAAGCUAAUCUCAUUUAAUAAUAAUUCAAUCUUCCUUUAUUCUUUUUCUCUUAGCUUCUUUAGUAAACUUUAUACCAUCAUAGAACUUGCACCCGCCAUUUAUGAAUAAAACUUGCACAGAAAGUUUAAAGAAACUAAGAGAAAAAGAAUAAAGAAAGGCUAAAUUAUUAUUUAAAGACAUUAACUUACAAUGAUUAGUCAUUAUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006602711.2
ncRNA:24   UCG-AAUGUUACUAGUUAGUGAUAC   1
  =|=-||=|||**|||||||||||||
targets:2059   GGUGUUGCAAAAAUCAAUCACUAUG   2083

3.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62910-like (LOC100777919), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g62910-like(LOC100777919) coding protein psRNATarget