Search result

BaseInfo

ncRNA ID novel_gma_miR2832
Species Glycine max
Class miRNA
Genome position Chr10:34656840-34656970 [+]
Reference genome Glycine_max_v2.0
Source SRR1451663
Length 22
Mature sequence(if miRNA) 110 - CAUUCUAAGACGGUCGUUAGCU - 131
Stem-loop(if miRNA) --               A        C                GAG                   AU
  CUAAUGACCGUCUUA AAUGUCCA UUUCUAAGACGGUUGU   CUAAUGACUGUCUUAGAAA  A
  ||||||||||||||| |||||||| ||||||||||||||||   |||||||||||||||||||
  GAUUGCUGGCAGAAU UUACAGGU AAAGAUUCUGCCAGCA   GAUUAUUGGCAGAAUCUUU  G
UC               C        A                ---                   CA
Stem-loop sequence CUAAUGACCGUCUUAAAAUGUCCACUUUCUAAGACGGUUGUGAGCUAAUGACUGUCUUAGAAAAUAGACUUUCUAAGACGGUUAUUAGACGACCGUCUUAGAAAAUGGACAUUCUAAGACGGUCGUUAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762037.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUAC   1
  *|=*||*|||||||||||||||
targets:884   UGUAAAGGACCGUCUUAGAAUG   905

2.0 PREDICTED: Glycine max putative DUF21 domain-containing protein At1g03270 (LOC102659380), mRNA putative DUF21 domain-containing protein At1g03270(LOC102659380) coding protein psRNATarget
XM_014767461.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUAC   1
  ||-|||**||||||||||||||
targets:2610   AG-UAAAAACCGUCUUAGAAUG   2630

2.0 PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA putative dual specificity protein phosphatase DSP8(LOC100787468) coding protein psRNATarget
XM_014773514.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUAC   1
  *|=||*=*||||||||||||||
targets:374   UGUUAUUAACCGUCUUAGAAUG   395

3.0 PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA uncharacterized LOC106798042(LOC106798042) coding protein psRNATarget