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BaseInfo

ncRNA ID novel_gma_miR2824
Species Glycine max
Class miRNA
Genome position Chr14:26695687-26695845 [+]
Reference genome Glycine_max_v2.0
Source SRR1451663
Length 24
Mature sequence(if miRNA) 1 - UAACAUCGGGUUUUGUAAAUAACC - 24
Stem-loop(if miRNA) --         -GU        U                             AU            ---UCA      A  U
  UAACAUCGG   UUUGUAAA AACCGAUGUUAAUAUGCGUAAAUAACAUC  UUUUUGGAAGAA      AUGUUA GU G
  |||||||||   |||||||| |||||||||||||||||||||||||||||  ||||||||||||      |||||| || U
  GUUGUAGCU   AAAUGUUU UUGGCUACAAUUAUAUGUGUUUGUUGUAG  AAAAACUUUUUU      UACAAU CG A
UU         AAU        -                             CU            UUUUAC      -  U
Stem-loop sequence UAACAUCGGGUUUUGUAAAUAACCGAUGUUAAUAUGCGUAAAUAACAUCAUUUUUUGGAAGAAUCAAUGUUAAGUUGUAUGCUAACAUCAUUUUUUUUUUCAAAAAUCGAUGUUGUUUGUGUAUAUUAACAUCGGUUUUUGUAAAUAAUCGAUGUUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003544817.3
ncRNA:24   CCAAUAAAUGUUUUGGGCUACAAU   1
  *|||=**||||||||||||||||*
targets:1168   CGUUGCAUACAAAACCCGAUGUUC   1191

3.0 PREDICTED: Glycine max probable serine/threonine-protein kinase At4g35230 (LOC100781583), transcript variant X2, mRNA probable serine/threonine-protein kinase At4g35230(LOC100781583) coding protein psRNATarget
XM_003544816.3
ncRNA:24   CCAAUAAAUGUUUUGGGCUACAAU   1
  *|||=**||||||||||||||||*
targets:1221   CGUUGCAUACAAAACCCGAUGUUC   1244

3.0 PREDICTED: Glycine max probable serine/threonine-protein kinase At4g35230 (LOC100781583), transcript variant X1, mRNA probable serine/threonine-protein kinase At4g35230(LOC100781583) coding protein psRNATarget