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BaseInfo

ncRNA ID novel_gma_miR2822
Species Glycine max
Class miRNA
Genome position Chr5:16458588-16458719 [-]
Reference genome Glycine_max_v2.0
Source SRR1294484
Length 24
Mature sequence(if miRNA) 109 - CAAUUUCGUGCGUCUCUAUAUGUG - 132
Stem-loop(if miRNA) --      C -      U U    G    UC  C  -   C     -UCC     AAAAG       CAU
  CAAUUU G UGCGUC C AUAU UGAG  GC CG AAU GGACA    GAGUU     UGAUGUG   U
  |||||| | |||||| | |||| ||||  || || ||| |||||    |||||     |||||||
  GUUAAG C GCGUAG G UAUA GCUC  CG GC UUA CUUGU    UUCGA     ACUGUAU   U
AG      U U      C -    -    UA  A  A   A     UGCC     ---GA       AAA
Stem-loop sequence CAAUUUCGUGCGUCUCUAUAUGUGAGUCGCCCGAAUCGGACAUCCGAGUUAAAAGUGAUGUGCAUUUAAAUAUGUCAAGAGCUUCCGUUGUUCAAUUACGAGCAUCUCGAUAUGCGAUGCGUCUGAAUUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB171037.1
ncRNA:24   GUGUAUAUCUCUGCGUGCUUUAAC   1
  *|=||||*|||||||*||||||||
targets:33   AAUAUAUCGAGACGCUCGAAAUUG   56

2.5 Sequence 8701 from Patent EP2559767 NA coding protein psRNATarget
HI410576.1
ncRNA:24   GUGUAUAUCUCUGCGUGCUUUAAC   1
  *|=||||*|||||||*||||||||
targets:33   AAUAUAUCGAGACGCUCGAAAUUG   56

2.5 Sequence 8701 from Patent EP2074227 NA coding protein psRNATarget
LQ242706.1
ncRNA:24   GUGUAUAUCUCUGCGUGCUUUAAC   1
  *|=||||*|||||||*||||||||
targets:33   AAUAUAUCGAGACGCUCGAAAUUG   56

2.5 Sequence 8701 from Patent EP2985353 NA coding protein psRNATarget