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BaseInfo

ncRNA ID novel_gma_miR2799
Species Glycine max
Class miRNA
Genome position Chr4:48880246-48880326 [+]
Reference genome Glycine_max_v2.0
Source SRR1294484
Length 24
Mature sequence(if miRNA) 1 - GAUGAGAGUAGGAAGAUGAUGAGU - 24
Stem-loop(if miRNA) --G       U      A        ---U     AAAAUUG
   AUGAGAG AGGAAG UGAUGAGU    UUCAA       A
   ||||||| |||||| ||||||||    |||||       C
   UAUUCUU UUCUUC AUUAUUCA    AAGUU       A
UUA       -      G        UGUU     CAAUUCC
Stem-loop sequence GAUGAGAGUAGGAAGAUGAUGAGUUUUCAAAAAAUUGACACCUUAACUUGAAUUGUACUUAUUAGCUUCUUUUCUUAUAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003536833.3
ncRNA:24   UGAGUAGUAGAAGGAUGAGAGUAG   1
  **||*||||||||||||*|||||=
targets:30   CAUCCUCAUCUUCCUACCCUCAUU   53

2.5 PREDICTED: Glycine max probable pectinesterase/pectinesterase inhibitor 41 (LOC100790729), mRNA probable pectinesterase/pectinesterase inhibitor 41(LOC100790729) coding protein psRNATarget