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BaseInfo

ncRNA ID	novel_gma_miR2788
Species	Glycine max
Class	miRNA
Genome position	Chr3:25513247-25513352 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451662;SRR1451609;SRR1451612
Length	22
Mature sequence(if miRNA)	1 - UUUCUGUUUUUAUUUUCUGAAA - 22
Stem-loop(if miRNA)	--    --           UC       UGUUUUCA   UCAAAAGAUUAAAAUU   UUUC  UGUUUUUAUUU  UGAAAAC        UUU                C   ||||  |||||||||||  |||||||        |||                U   AAAG  ACAAAAAUAAA  GCUUUUG        CAG                G UA    UC           GA       ---UUCUU   UUUGGUUUGUAAAAAA
Stem-loop sequence	UUUCUGUUUUUAUUUUCUGAAAACUGUUUUCAUUUUCAAAAGAUUAAAAUUCUGAAAAAAUGUUUGGUUUGACUUCUUGUUUUCGAGAAAUAAAAACACUGAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006580262.2	ncRNA:22   AAAGUCUUUUAUUUUUGUCUUU   1   **|||||||*|||||||||||| targets:9   CGUCAGAAAUUAAAAACAGAAA   30 Target Full Sequence	1.5	PREDICTED: Glycine max carbamoyl-phosphate synthase small chain, chloroplastic-like (LOC100776931), transcript variant X2, mRNA	carbamoyl-phosphate synthase small chain, chloroplastic-like(LOC100776931)	coding protein	psRNATarget
XM_003525056.3	ncRNA:22   AAAGUCUUUUAUUUUUGUCUUU   1   **|||||||*|||||||||||| targets:6   CGUCAGAAAUUAAAAACAGAAA   27 Target Full Sequence	1.5	PREDICTED: Glycine max carbamoyl-phosphate synthase small chain, chloroplastic-like (LOC100776931), transcript variant X1, mRNA	carbamoyl-phosphate synthase small chain, chloroplastic-like(LOC100776931)	coding protein	psRNATarget
XM_006575153.2	ncRNA:22   AAAGUCUUUUAUUUUUGUCUUU   1   *||||||=||||||||*||||| targets:2971   AUUCAGAGAAUAAAAAAAGAAA   2992 Target Full Sequence	2.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial (LOC100797551), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial(LOC100797551)	coding protein	psRNATarget
XM_003518014.3	ncRNA:22   AAAGUCUUUUAUUUUUGUCUUU   1   *||||||=||||||||*||||| targets:3075   AUUCAGAGAAUAAAAAAAGAAA   3096 Target Full Sequence	2.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial (LOC100797551), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial(LOC100797551)	coding protein	psRNATarget
XM_006595558.2	ncRNA:22   AAAGUCUUUUAUUUUUGUCUUU   1   |||||||*||||||||*||||| targets:4   UUUCAGAUAAUAAAAAGAGAAA   25 Target Full Sequence	2.5	PREDICTED: Glycine max pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like (LOC100817577), transcript variant X1, mRNA	pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like(LOC100817577)	coding protein	psRNATarget