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BaseInfo

ncRNA ID novel_gma_miR2724
Species Glycine max
Class miRNA
Genome position Chr3:1756624-1756812 [-]
Reference genome Glycine_max_v2.0
Source SRR1451661
Length 21
Mature sequence(if miRNA) 1 - GUAUAAAGGAUAAUGAGACAU - 21
Stem-loop(if miRNA) --A     C                    UUA               C    -      -         ----A     GUC   A  U     AUAU
   UCUCA UAUCUUUUAUACUCAUCUCA   UUUUUUAAAAUUUAA UUUC CUUUUU CUCACAAUU     AUUUG   UAU CU AGUAU    U
   ||||| ||||||||||||||||||||   ||||||||||||||| |||| |||||| |||||||||     |||||   ||| || |||||    C
   AGAGU AUAGGAAAUAUGAGUGGAGU   AAAAAAUUUUAAAUU AAAG GAAAAA GAGUGUUAA     UAAAU   AUA GA UCAUA    A
UAC     A                    -UA               A    A      A         AAAAA     -AA   C  U     ACUG
Stem-loop sequence AUCUCACUAUCUUUUAUACUCAUCUCAUUAUUUUUUAAAAUUUAACUUUCCUUUUUCUCACAAUUAAUUUGGUCUAUACUUAGUAUAUAUUCAGUCAAUACUUAGCAUAAAUAAAUAAAAAAAUUGUGAGAAAAAAGAGAAAAUUAAAUUUUAAAAAAAUUGAGGUGAGUAUAAAGGAUAAUGAGACAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003532057.3
ncRNA:21   UACAGAGUAAUAGGAAAUAUG   1
  *||*=||*|||||||||||||
targets:164   UUGCUUCUUUAUCCUUUAUAC   184

3.0 PREDICTED: Glycine max HVA22-like protein f (LOC100819566), mRNA HVA22-like protein f(LOC100819566) coding protein psRNATarget