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BaseInfo

ncRNA ID novel_gma_miR2720
Species Glycine max
Class miRNA
Genome position Chr20:7205437-7205548 [-]
Reference genome Glycine_max_v2.0
Source SRR1451661
Length 20
Mature sequence(if miRNA) 1 - AGUUUUGAUUGGAGAAAAGU - 20
Stem-loop(if miRNA) --UA    G                    C         A  UGGAAUAAAG     - AU
    UUCU CAAUCAAAAUUGGAGUUUCA UUCAGUAAC CG          GUUGA C  U
    |||| |||||||||||||||||||| ||||||||| ||          ||||| |
    AAGA GUUAGUUUUGAUCUCAAAGU GAGUCAUUG GU          CGACU G  U
UGAA    G                    A         -  --------UA     A AA
Stem-loop sequence UAUUCUGCAAUCAAAAUUGGAGUUUCACUUCAGUAACACGUGGAAUAAAGGUUGACAUUUAAGAUCAGCAUUGGUUACUGAGAUGAAACUCUAGUUUUGAUUGGAGAAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518523.3
ncRNA:20   UGAAAAGAGGUUAGUUUUGA   1
  *=|||||||||||*||||||
targets:426   CUUUUUCUCCAAUGAAAACU   445

2.5 PREDICTED: Glycine max WRKY transcription factor 1-like (LOC100782726), mRNA WRKY transcription factor 1-like(LOC100782726) coding protein psRNATarget
XM_006573142.2
ncRNA:20   UGAAAAGAGGUUAGUUUUGA   1
  ==||*||||||||||||||*
targets:377   GUUUGUCUCCAAUCAAAACC   396

3.0 PREDICTED: Glycine max uncharacterized LOC100777527 (LOC100777527), transcript variant X2, mRNA uncharacterized LOC100777527(LOC100777527) coding protein psRNATarget
XM_006573141.2
ncRNA:20   UGAAAAGAGGUUAGUUUUGA   1
  ==||*||||||||||||||*
targets:377   GUUUGUCUCCAAUCAAAACC   396

3.0 PREDICTED: Glycine max uncharacterized LOC100777527 (LOC100777527), transcript variant X1, mRNA uncharacterized LOC100777527(LOC100777527) coding protein psRNATarget