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BaseInfo

ncRNA ID novel_gma_miR2683
Species Glycine max
Class miRNA
Genome position Chr1:1437126-1437192 [-]
Reference genome Glycine_max_v2.0
Source SRR1294484
Length 21
Mature sequence(if miRNA) 1 - UUUUUACGGAUCAAGUUGAUU - 21
Stem-loop(if miRNA) --    G             GC          A
  UCAA UUGAUUCGUAGAA  CUUACGGAUC A
  |||| |||||||||||||  |||||||||| C
  AGUU AACUAGGCAUUUU  GAAUGCCUAG U
UU    G             UA          U
Stem-loop sequence UCAAGUUGAUUCGUAGAAGCCUUACGGAUCAACUUGAUCCGUAAGAUUUUUACGGAUCAAGUUGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768353.1
ncRNA:21   UUAGUUGAACUAGGCAUUUUU   1
  =|||||||||||||||||||*
targets:488   GAUCAACUUGAUCCGUAAAAU   508

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006600975.2
ncRNA:21   UUAGUUGAACUAGGCAUUUUU   1
  =||=||||||||||||||||=
targets:1228   GAUUAACUUGAUCCGUAAAAG   1248

2.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_006577670.2
ncRNA:21   UUAGUUGAACUAGGCAUUUUU   1
  =*|||||||||||||||*||=
targets:1050   GUUCAACUUGAUCCGUACAAG   1070

2.5 PREDICTED: Glycine max serine/threonine-protein kinase haspin-like (LOC102663674), mRNA serine/threonine-protein kinase haspin-like(LOC102663674) coding protein psRNATarget
XM_006604718.2
ncRNA:21   UUAGUUGAACUAGGCAUUUUU   1
  =*|||||||||||||||*||=
targets:2082   GUUCAACUUGAUCCGUACAAG   2102

2.5 PREDICTED: Glycine max serine/threonine-protein kinase haspin-like (LOC100790036), mRNA serine/threonine-protein kinase haspin-like(LOC100790036) coding protein psRNATarget
AK286227.1
ncRNA:21   UUAGUU-GAACUAGGCAUUUUU   1
  **||||-=||||||||||||||
targets:1376   CUUCAAAUUUGAUCCGUAAAAA   1397

3.0 Glycine max cDNA, clone: GMFL01-24-F19 NA coding protein psRNATarget