Search result

BaseInfo

ncRNA ID	novel_gma_miR2681
Species	Glycine max
Class	miRNA
Genome position	Chr11:19052201-19052281 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451661
Length	21
Mature sequence(if miRNA)	1 - UGAAUAACCGUCUUAGAAUGU - 21
Stem-loop(if miRNA)	--       AG A   -   CCC         A      UAU   AUUUUAA  C GUU UUC   AAAAAUCGU UUAGAA   A   |||||||  | ||| |||   ||||||||| ||||||   UAAGAUU  G CAA AAG   UUUUUAGUA AAUCUU   A UG       CU C   U   --U         G      UCA
Stem-loop sequence	AUUUUAAAGCAGUUUUCCCCAAAAAUCGUAUUAGAAUAUAAACUUUCUAAGAUGAUUUUUUGAAUAACCGUCUUAGAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014773514.1	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   |||||||||||||||||||== targets:268   ACAUUCUAAGACGGUUAUUUG   288 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA	uncharacterized LOC106798042(LOC106798042)	coding protein	psRNATarget
XM_006599236.2	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   |||||=|||||||||||||*| targets:479   ACAUUUUAAGACGGUUAUUGA   499 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA	uncharacterized LOC100788736(LOC100788736)	coding protein	psRNATarget
XM_014775607.1	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   ||||||*||||||||||||*| targets:1488   ACAUUCAAAGACGGUUAUUAA   1508 Target Full Sequence	2.5	PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA	protein MOR1(LOC102659664)	coding protein	psRNATarget
XM_014775607.1	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   ||||||*||||||||||||*| targets:1543   ACAUUCAAAGACGGUUAUUAA   1563 Target Full Sequence	2.5	PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA	protein MOR1(LOC102659664)	coding protein	psRNATarget
NM_001319731.1	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   **|||||*|||||*||||||| targets:877   UGAUUCUUAGACGCUUAUUCA   897 Target Full Sequence	2.5	Glycine max ubiquitin-like-conjugating enzyme ATG10 (LOC100808589), mRNA	ubiquitin-like-conjugating enzyme ATG10(LOC100808589)	coding protein	psRNATarget
XM_006576604.2	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   **|||||*|||||*||||||| targets:967   UGAUUCUUAGACGCUUAUUCA   987 Target Full Sequence	2.5	PREDICTED: Glycine max ubiquitin-like-conjugating enzyme ATG10 (LOC100808589), transcript variant X1, mRNA	ubiquitin-like-conjugating enzyme ATG10(LOC100808589)	coding protein	psRNATarget
XM_014773662.1	ncRNA:21   UGUAAGAUUCUGCCAAUAAGU   1   **|||||*|||||*||||||| targets:1055   UGAUUCUUAGACGCUUAUUCA   1075 Target Full Sequence	2.5	PREDICTED: Glycine max ubiquitin-like-conjugating enzyme ATG10 (LOC100808589), transcript variant X2, mRNA	ubiquitin-like-conjugating enzyme ATG10(LOC100808589)	coding protein	psRNATarget