ncRNA ID | novel_gma_miR2663 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr5:15717991-15718105 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451660 |
Length | 23 |
Mature sequence(if miRNA) | 1 - UGAUUGAAUGAUGAUAUAAAAUU - 23 |
Stem-loop(if miRNA) |
--UUUCAC                  AUA       AU    U   CAG   AG            AUUAUCAUUCAAUCACAA   AUCAUUG  AUGA UCU   GAU  UUAU         ||||||||||||||||||   |||||||  |||| |||   |||  |||U         UAGUAGUAAGUUAGUGUU   UGGUGAU  UAUU AGA   CUG  AAUA UUAAAAUA                  AAG       AC    U   UAA   AA    |
Stem-loop sequence | UUUCACAUUAUCAUUCAAUCACAAAUAAUCAUUGAUAUGAUUCUCAGGAUAGUUAUUAUAAAAGUCAAUAGAUUUAUCAUAGUGGUGAAUUGUGAUUGAAUGAUGAUAUAAAAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001252851.2 |
|
2.5 | Glycine max BTB/POZ domain-containing protein At3g05675-like (LOC100815389), mRNA | BTB/POZ domain-containing protein At3g05675-like(LOC100815389) | coding protein | psRNATarget | |||||||||
BT093667.1 |
|
2.5 | Soybean clone JCVI-FLGm-17J15 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_003527480.3 |
|
2.5 | PREDICTED: Glycine max BTB/POZ domain-containing protein At3g05675-like (LOC100812225), mRNA | BTB/POZ domain-containing protein At3g05675-like(LOC100812225) | coding protein | psRNATarget |