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BaseInfo

ncRNA ID novel_gma_miR2662
Species Glycine max
Class miRNA
Genome position Chr4:15965972-15966088 [+]
Reference genome Glycine_max_v2.0
Source SRR1451660;SRR1294485
Length 21
Mature sequence(if miRNA) 1 - AAUUACUCUUUUUGUCCCUCU - 21
Stem-loop(if miRNA) --            U          U  C       -----GU    U    UCCCU    GA
  AAUUACUCUUUU GUCCCUCUUU UA UUAAUUU       UCAA UUGG     CUAU  U
  |||||||||||| |||||||||| || |||||||       |||| ||||     ||||
  UUAAUGAGGAAA CAGGGAGAAA AU AAUUAAA       GGUU AACU     GGUA  U
AU            C          C  A       AUUCCUU    U    ----U    AA
Stem-loop sequence AAUUACUCUUUUUGUCCCUCUUUUUACUUAAUUUGUUCAAUUUGGUCCCUCUAUGAUUAAAUGGUUCAAUUUGGUUCCUUAAAAUUAAAUACAAAGAGGGACCAAAGGAGUAAUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779092.1
ncRNA:21   UCUCCCUGUUUUUCUCAUUAA   1
  |||*||||||||||=||||||
targets:1883   AGAAGGACAAAAAGGGUAAUU   1903

2.5 PREDICTED: Glycine max uncharacterized LOC100306211 (LOC100306211), transcript variant X4, mRNA uncharacterized LOC100306211(LOC100306211) coding protein psRNATarget
XM_014779091.1
ncRNA:21   UCUCCCUGUUUUUCUCAUUAA   1
  |||*||||||||||=||||||
targets:1886   AGAAGGACAAAAAGGGUAAUU   1906

2.5 PREDICTED: Glycine max uncharacterized LOC100306211 (LOC100306211), transcript variant X3, mRNA uncharacterized LOC100306211(LOC100306211) coding protein psRNATarget
XM_014775471.1
ncRNA:21   UCUCCCUGUUUUUCUCAUUAA   1
  |||*||||||||||=||||||
targets:766   AGAAGGACAAAAAGGGUAAUU   786

2.5 PREDICTED: Glycine max subtilisin-like protease SBT5.3 (LOC106798704), mRNA subtilisin-like protease SBT5.3(LOC106798704) coding protein psRNATarget