ncRNA ID | novel_gma_miR2662 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr4:15965972-15966088 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451660;SRR1294485 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AAUUACUCUUUUUGUCCCUCU - 21 |
Stem-loop(if miRNA) |
--            U          U  C       -----GU    U    UCCCU    GA   AAUUACUCUUUU GUCCCUCUUU UA UUAAUUU       UCAA UUGG     CUAU  U   |||||||||||| |||||||||| || |||||||       |||| ||||     ||||   UUAAUGAGGAAA CAGGGAGAAA AU AAUUAAA       GGUU AACU     GGUA  U AU            C          C  A       AUUCCUU    U    ----U    AA |
Stem-loop sequence | AAUUACUCUUUUUGUCCCUCUUUUUACUUAAUUUGUUCAAUUUGGUCCCUCUAUGAUUAAAUGGUUCAAUUUGGUUCCUUAAAAUUAAAUACAAAGAGGGACCAAAGGAGUAAUUUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014779092.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100306211 (LOC100306211), transcript variant X4, mRNA | uncharacterized LOC100306211(LOC100306211) | coding protein | psRNATarget | |||||||||
XM_014779091.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100306211 (LOC100306211), transcript variant X3, mRNA | uncharacterized LOC100306211(LOC100306211) | coding protein | psRNATarget | |||||||||
XM_014775471.1 |
|
2.5 | PREDICTED: Glycine max subtilisin-like protease SBT5.3 (LOC106798704), mRNA | subtilisin-like protease SBT5.3(LOC106798704) | coding protein | psRNATarget |