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BaseInfo

ncRNA ID novel_gma_miR2620
Species Glycine max
Class miRNA
Genome position Chr16:4273690-4273758 [-]
Reference genome Glycine_max_v2.0
Source SRR1294484;SRR1294485
Length 24
Mature sequence(if miRNA) 1 - GUAGAAAAACUCUCAAAAGCACUU - 24
Stem-loop(if miRNA) --AUA                  ACU     UAU
     CUUUUGAGAGUUUUUUUA   GGAAA   A
     ||||||||||||||||||   |||||   A
     GAAAACUCUCAAAAAGAU   CCUUU   A
UUCAC                  GGU     UCA
Stem-loop sequence AUACUUUUGAGAGUUUUUUUAACUGGAAAUAUAAAACUUUUCCUGGUAGAAAAACUCUCAAAAGCACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006605184.2
ncRNA:24   UUCACGAAAACUCUCAAAAAGAUG   1
  =||*|=||||||||||||||||*|
targets:822   GAGGGUUUUUGAGAGUUUUUCUCC   845

2.5 PREDICTED: Glycine max RING-H2 finger protein ATL5-like (LOC100800433), mRNA RING-H2 finger protein ATL5-like(LOC100800433) coding protein psRNATarget
XM_014772955.1
ncRNA:24   UUCACGAAAACUCUCAAAAAGAUG   1
  *|*||||*||||||||||||*|||
targets:636   UAUUGCUGUUGAGAGUUUUUGUAC   659

2.5 PREDICTED: Glycine max heavy metal-associated isoprenylated plant protein 26-like (LOC100779672), transcript variant X2, mRNA heavy metal-associated isoprenylated plant protein 26-like(LOC100779672) coding protein psRNATarget