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BaseInfo

ncRNA ID	novel_gma_miR2616
Species	Glycine max
Class	miRNA
Genome position	Chr15:20557132-20557336 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451660;SRR1451662
Length	24
Mature sequence(if miRNA)	1 - UUAAGGACCAAAAAUAAAAUUAUU - 24
Stem-loop(if miRNA)	--                               -     U     A     A      UAUU    C   A   UAAUUUU               C    CCUU   UAAUUUUAUUUUUGGUCUUUAACACUUUUUU GUCCU GAUAA UUAGU AAUUUU    UUUG UUU UGA       UUUUUCAUUUGUUAU AGUC    U   ||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||    |||| ||| |||       ||||||||||||||| ||||    A   AUUAAAAUAAAAACCAGGAAUUGUGGAAAAA CAGGG CUAUU AAUUA UUAAAA    AAAC AAA ACU       AAAAAGUAAACAAUA UCAG    A UU                               U     U     -     C      -CAC    -   A   --UAUUU               A    AAAA
Stem-loop sequence	UAAUUUUAUUUUUGGUCUUUAACACUUUUUUGUCCUUGAUAAAUUAGUAAAUUUUUAUUUUUGCUUUAUGAUAAUUUUUUUUUCAUUUGUUAUCAGUCCCUUUAAAAAAGACUAAUAACAAAUGAAAAAUUUAUUCAAAAACAAACACAAAAUUCAUUAAUUAUCUGGGACUAAAAAGGUGUUAAGGACCAAAAAUAAAAUUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014777736.1	ncRNA:24   UUAUUAAAAUAAAAACCAGGAAUU   1   =||||||*||*||||||||||||| targets:395   GAUAAUUCUAAUUUUGGUCCUUAA   418 Target Full Sequence	2.0	PREDICTED: Glycine max calcium-transporting ATPase, endoplasmic reticulum-type-like (LOC100800498), transcript variant X2, mRNA	calcium-transporting ATPase, endoplasmic reticulum-type-like(LOC100800498)	coding protein	psRNATarget
XM_014777737.1	ncRNA:24   UUAUUAAAAUAAAAACCAGGAAUU   1   =||||||*||*||||||||||||| targets:608   GAUAAUUCUAAUUUUGGUCCUUAA   631 Target Full Sequence	2.0	PREDICTED: Glycine max calcium-transporting ATPase, endoplasmic reticulum-type-like (LOC100800498), transcript variant X3, mRNA	calcium-transporting ATPase, endoplasmic reticulum-type-like(LOC100800498)	coding protein	psRNATarget
XM_003528730.3	ncRNA:24   UUAUUAAAAUAAAAACCAGGAAUU   1   =||||||*||*||||||||||||| targets:620   GAUAAUUCUAAUUUUGGUCCUUAA   643 Target Full Sequence	2.0	PREDICTED: Glycine max calcium-transporting ATPase, endoplasmic reticulum-type-like (LOC100800498), transcript variant X1, mRNA	calcium-transporting ATPase, endoplasmic reticulum-type-like(LOC100800498)	coding protein	psRNATarget
XM_003534248.3	ncRNA:24   UUAUUAAAAUAAAAACCAGGAAUU   1   ||||*|||*||||||||||=|||| targets:1715   AAUAUUUUCAUUUUUGGUCUUUAA   1738 Target Full Sequence	2.5	PREDICTED: Glycine max UV-B-induced protein At3g17800, chloroplastic-like (LOC100802337), transcript variant X1, mRNA	UV-B-induced protein At3g17800, chloroplastic-like(LOC100802337)	coding protein	psRNATarget
XM_014762311.1	ncRNA:24   UUAUUAAAAUAAAAACCAGGAAUU   1   ||||*|||*||||||||||=|||| targets:1743   AAUAUUUUCAUUUUUGGUCUUUAA   1766 Target Full Sequence	2.5	PREDICTED: Glycine max UV-B-induced protein At3g17800, chloroplastic-like (LOC100802337), transcript variant X2, mRNA	UV-B-induced protein At3g17800, chloroplastic-like(LOC100802337)	coding protein	psRNATarget
XM_006579459.2	ncRNA:24   UUAU-UAAAAUAAAAACCAGGAAUU   1   |||=-||||||*||||*|||||||| targets:2107   AAUGUAUUUUAGUUUUUGUCCUUAA   2131 Target Full Sequence	2.5	PREDICTED: Glycine max shootin-1 (LOC100781747), transcript variant X4, mRNA	shootin-1(LOC100781747)	coding protein	psRNATarget
XM_014775422.1	ncRNA:24   UUAU-UAAAAUAAAAACCAGGAAUU   1   |||=-||||||*||||*|||||||| targets:2158   AAUGUAUUUUAGUUUUUGUCCUUAA   2182 Target Full Sequence	2.5	PREDICTED: Glycine max shootin-1 (LOC100781747), transcript variant X5, mRNA	shootin-1(LOC100781747)	coding protein	psRNATarget
XM_006579458.2	ncRNA:24   UUAU-UAAAAUAAAAACCAGGAAUU   1   |||=-||||||*||||*|||||||| targets:2231   AAUGUAUUUUAGUUUUUGUCCUUAA   2255 Target Full Sequence	2.5	PREDICTED: Glycine max shootin-1 (LOC100781747), transcript variant X3, mRNA	shootin-1(LOC100781747)	coding protein	psRNATarget
XM_006579457.2	ncRNA:24   UUAU-UAAAAUAAAAACCAGGAAUU   1   |||=-||||||*||||*|||||||| targets:2234   AAUGUAUUUUAGUUUUUGUCCUUAA   2258 Target Full Sequence	2.5	PREDICTED: Glycine max shootin-1 (LOC100781747), transcript variant X1, mRNA	shootin-1(LOC100781747)	coding protein	psRNATarget