ncRNA ID | novel_gma_miR2589 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr8:13721107-13721239 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451658 |
Length | 24 |
Mature sequence(if miRNA) | 110 - AACAUAUGAUUAAGGAUACUUUAG - 133 |
Stem-loop(if miRNA) |
--    UA  A        AC     AAAAUAG      UUUUAUGAAAUC         A   A  AAAU   AACA  UG UUAAGGAU  UUUAG       UUCUUU            AAGAAAAUU GGU CU    U   ||||  || ||||||||  |||||       ||||||            ||||||||| ||| ||    A   UUGU  AC AGUUCUUA  AAAUC       AAGAAA            UUUUUUUGA CCA GG    A AU    GC  A        GU     GUAAAAA      ----------UU         A   A  AACA |
Stem-loop sequence | AACAUAUGAUUAAGGAUACUUUAGAAAAUAGUUCUUUUUUUAUGAAAUCAAGAAAAUUAGGUACUAAAUUAAACAAGGAACCAAGUUUUUUUUUAAAGAAAAAAAUGCUAAAUGAUUCUUGAACACGUGUUUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006573357.2 |
|
2.5 | PREDICTED: Glycine max methionine aminopeptidase 1A-like (LOC100785022), transcript variant X3, mRNA | methionine aminopeptidase 1A-like(LOC100785022) | coding protein | psRNATarget | |||||||||
XM_003516984.3 |
|
2.5 | PREDICTED: Glycine max methionine aminopeptidase 1A-like (LOC100785022), transcript variant X1, mRNA | methionine aminopeptidase 1A-like(LOC100785022) | coding protein | psRNATarget |