ncRNA ID | novel_gma_miR2584 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr6:48348371-48348516 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451658 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AAGCUAACACCAAGAUGACGACU - 23 |
Stem-loop(if miRNA) |
---AA     C   AA  U     --CU        -----  CC     UG   CAA        CAU   UCUCACUA      GCUAA ACC  GA GACGA    AAUAACAC     UC  CUUGA  AUC   GUUACUUU   AGG        A      ||||| |||  || |||||    ||||||||     ||  |||||  |||   ||||||||   |||        A      UGAUU UGG  CU UUGUU    UUAUUGUG     AG  GAACU  UAG   UAGUGAAA   UCU        A CCUUC     -   --  U     UCAC        AAUAA  AA     --   -AG        -AU   UCUAAAAA |
Stem-loop sequence | AAGCUAACACCAAGAUGACGACUAAUAACACUCCCCUUGAUGAUCCAAGUUACUUUCAUAGGUCUCACUAAAAAAAAAUCUUCUUAAAAGUGAUGAGAUUCAAGAAGAAAUAAGUGUUAUUCACUUUGUUUUCGGUUUAGUCUUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006598025.2 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC100780877 (LOC100780877), transcript variant X1, mRNA | uncharacterized LOC100780877(LOC100780877) | coding protein | psRNATarget | |||||||||
XM_006598026.2 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC100780877 (LOC100780877), transcript variant X2, mRNA | uncharacterized LOC100780877(LOC100780877) | coding protein | psRNATarget | |||||||||
XM_006594307.2 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC100813299 (LOC100813299), transcript variant X1, mRNA | uncharacterized LOC100813299(LOC100813299) | coding protein | psRNATarget | |||||||||
XM_014765673.1 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC100813299 (LOC100813299), transcript variant X2, mRNA | uncharacterized LOC100813299(LOC100813299) | coding protein | psRNATarget |