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BaseInfo

ncRNA ID novel_gma_miR2575
Species Glycine max
Class miRNA
Genome position Chr4:18206125-18206212 [+]
Reference genome Glycine_max_v2.0
Source SRR1451658;SRR1451661;SRR1294484;SRR1295521;SRR1295531;SRR1451625
Length 21
Mature sequence(if miRNA) 68 - CAAACAUGAGAAAUAGCGGCC - 88
Stem-loop(if miRNA) CUUUGUUUUUA   -       ----GAC   ACCGGGGAACGGGAAUAAU
           GGU GUUAUUU       GGA                   U
           ||| |||||||       |||
           CCG CGAUAAA       AAC                   U
-----------   G       GAGUACA   UUACAGUUUCUUGGGUUUU
Stem-loop sequence CUUUGUUUUUAGGUGUUAUUUGACGGAACCGGGGAACGGGAAUAAUUUUUUUGGGUUCUUUGACAUUCAAACAUGAGAAAUAGCGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095187.1
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  |*=|*||=|||||||||||||
targets:230   GUUCUCUGUUUCUCAUGUUUG   250

3.0 Soybean clone JCVI-FLGm-6N2 unknown mRNA NA coding protein psRNATarget
BT093834.1
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  **|=||*|||||||||||||*
targets:1441   AUCUGCAAUUUCUCAUGUUUA   1461

3.0 Soybean clone JCVI-FLGm-24O10 unknown mRNA NA coding protein psRNATarget
AK287363.1
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  **|=||*|||||||||||||*
targets:1440   AUCUGCAAUUUCUCAUGUUUA   1460

3.0 Glycine max cDNA, clone: GMFL01-51-H23 NA coding protein psRNATarget
XM_003551889.3
ncRNA:21   CCGGCGAUAAAGAGUACAAAC   1
  **|=||*|||||||||||||*
targets:1551   AUCUGCAAUUUCUCAUGUUUA   1571

3.0 PREDICTED: Glycine max spermidine hydroxycinnamoyl transferase-like (LOC100778626), mRNA spermidine hydroxycinnamoyl transferase-like(LOC100778626) coding protein psRNATarget