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BaseInfo

ncRNA ID novel_gma_miR2567
Species Glycine max
Class miRNA
Genome position Chr2:14187447-14187525 [+]
Reference genome Glycine_max_v2.0
Source SRR1451658
Length 20
Mature sequence(if miRNA) 1 - UUGGAUUGAGAAUUUUAAUU - 20
Stem-loop(if miRNA) -- UG   UGA        -          --GU     AU
  U  GAU   GAAUUUUA AUUGAGGAAA    AAUUU  U
  |  |||   |||||||| ||||||||||    |||||
  G  UUG   CUUAAAAU UAAUUUUUUU    UUAAG  U
UA GU   UUA        C          AAAU     AG
Stem-loop sequence UUGGAUUGAGAAUUUUAAUUGAGGAAAGUAAUUUAUUUGAGAAUUUAAAUUUUUUUAAUCUAAAAUUCAUUGUUUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014777926.1
ncRNA:20   UUAAUUUUAAGAGUUAGGUU   1
  =|||||||||||||||=|||
targets:17   GAUUAAAAUUCUCAAUUCAA   36

1.5 PREDICTED: Glycine max uncharacterized LOC100810113 (LOC100810113), transcript variant X2, mRNA uncharacterized LOC100810113(LOC100810113) coding protein psRNATarget
XM_014774856.1
ncRNA:20   UUAAUUUUAAGAGUUAGGUU   1
  ||||=|||||||||||*|||
targets:848   AAUUGAAAUUCUCAAUGCAA   867

2.5 PREDICTED: Glycine max translation factor GUF1 homolog, chloroplastic-like (LOC100809693), transcript variant X2, mRNA translation factor GUF1 homolog, chloroplastic-like(LOC100809693) coding protein psRNATarget
XM_003526844.3
ncRNA:20   UUAAUUUUAAGAGUUAGGUU   1
  ||||=|||||||||||*|||
targets:782   AAUUGAAAUUCUCAAUGCAA   801

2.5 PREDICTED: Glycine max translation factor GUF1 homolog, chloroplastic-like (LOC100784073), mRNA translation factor GUF1 homolog, chloroplastic-like(LOC100784073) coding protein psRNATarget
XM_014774855.1
ncRNA:20   UUAAUUUUAAGAGUUAGGUU   1
  ||||=|||||||||||*|||
targets:848   AAUUGAAAUUCUCAAUGCAA   867

2.5 PREDICTED: Glycine max translation factor GUF1 homolog, chloroplastic-like (LOC100809693), transcript variant X1, mRNA translation factor GUF1 homolog, chloroplastic-like(LOC100809693) coding protein psRNATarget
XM_003555406.3
ncRNA:20   UUAAUUUUAAGAGUUAGGUU   1
  *|||=||||||||||*||||
targets:97   CAUUGAAAUUCUCAAACCAA   116

2.5 PREDICTED: Glycine max zinc finger protein WIP6-like (LOC100784037), mRNA zinc finger protein WIP6-like(LOC100784037) coding protein psRNATarget
XM_003526596.3
ncRNA:20   UUAAUUUUAAGAGUUAGGUU   1
  =||*=||||||||||||||*
targets:538   GAUGGAAAUUCUCAAUCCAU   557

3.0 PREDICTED: Glycine max BTB/POZ domain-containing protein At1g21780 (LOC100787262), mRNA BTB/POZ domain-containing protein At1g21780(LOC100787262) coding protein psRNATarget