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BaseInfo

ncRNA ID novel_gma_miR2563
Species Glycine max
Class miRNA
Genome position Chr2:17080267-17080360 [-]
Reference genome Glycine_max_v2.0
Source SRR1451658;SRR1451662;SRR1451606;SRR1451607;SRR1451609;SRR1451610;SRR1451621
Length 24
Mature sequence(if miRNA) 71 - AUUUUGAAUUUGAAUUUUGAACCU - 94
Stem-loop(if miRNA) ---A                UG ---AC    AAUCAA   CCA   GU
    UUUUGAAUUUGAAUUU  A     CUGU      GUA   GAU  U
    ||||||||||||||||  |     ||||      |||   |||  U
    AAAACUUAAACUUAAA  U     GGCA      CAU   CUA  U
ACUG                GU CUCAA    -ACGCC   AAG   AU
Stem-loop sequence AUUUUGAAUUUGAAUUUUGAACCUGUAAUCAAGUACCAGAUGUUUUUAAUCGAAUACCCGCAACGGAACUCUUGAAAUUCAAAUUCAAAAGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516345.3
ncRNA:24   UCCA---AGUUUUAAGUUUAAGUUUUA   1
  |||*---||||||||||||*|||||||
targets:189   AGGAAAAUCAAAAUUCAAAAUCAAAAU   215

1.5 PREDICTED: Glycine max protein trichome birefringence-like 35 (LOC100789791), mRNA protein trichome birefringence-like 35(LOC100789791) coding protein psRNATarget
XM_003518412.3
ncRNA:24   UCCAAGUUUUAAGUUUAAGUUUUA   1
  ****|||||||||||||||*||||
targets:134   UAAAUCAAAAUUCAAAUUCCAAAU   157

1.5 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4 (LOC100806769), mRNA BTB/POZ and MATH domain-containing protein 4(LOC100806769) coding protein psRNATarget