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BaseInfo

ncRNA ID novel_gma_miR2560
Species Glycine max
Class miRNA
Genome position Chr4:16107707-16107864 [-]
Reference genome Glycine_max_v2.0
Source SRR1292924;SRR1295520;SRR1295524;SRR1295531;SRR1451615
Length 25
Mature sequence(if miRNA) 1 - CAAUAAGAAUGUGACAUGUGACAGU - 25
Stem-loop(if miRNA) --  C                       U      A      A    A          UUA   A    AA  A  C UUU
  UG CACGUGUCACAUUCUUAUUGGAU AUGACU UCACGU UCCU UUCUGAUUGG   AUG AAAC  CA UG A   C
  || ||||||||||||||||||||||| |||||| |||||| |||| ||||||||||   ||| ||||  || || |
  AC GUGUACAGUGUAAGAAUAACCUA UACUGA AGUGCA AGGA AAGACUAACC   UAC UUUG  GU AC U   A
UG  A                       C      C      C    C          ---   A    AG  -  U UCU
Stem-loop sequence UGCCACGUGUCACAUUCUUAUUGGAUUAUGACUAUCACGUAUCCUAUUCUGAUUGGUUAAUGAAAACAACAAUGCAUUUCAUCUUUCAUGGAGUUUACAUCCAAUCAGAACAGGACACGUGACAGUCAUCAUCCAAUAAGAAUGUGACAUGUGACAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242575.1
ncRNA:25   UGACAGUGUACAGUGUAAGAAUAAC   1
  |*|||=|==||||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUUG   69

2.0 Sequence 8570 from Patent EP2985353 NA coding protein psRNATarget
JB170906.1
ncRNA:25   UGACAGUGUACAGUGUAAGAAUAAC   1
  |*|||=|==||||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUUG   69

2.0 Sequence 8570 from Patent EP2559767 NA coding protein psRNATarget
HI410445.1
ncRNA:25   UGACAGUGUACAGUGUAAGAAUAAC   1
  |*|||=|==||||||||||||||||
targets:45   AGUGUUAUGUGUCACAUUCUUAUUG   69

2.0 Sequence 8570 from Patent EP2074227 NA coding protein psRNATarget