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BaseInfo

ncRNA ID novel_gma_miR2554
Species Glycine max
Class miRNA
Genome position Chr19:37460794-37460892 [-]
Reference genome Glycine_max_v2.0
Source SRR1451658
Length 22
Mature sequence(if miRNA) 78 - UUGAAAAUCACAAUGAAAUCGU - 99
Stem-loop(if miRNA) --    A                      C      --------G      CC
  UUGA AAUCACAAUGAAAUCGUAUUUU AUUGUG         UGUUUU  A
  |||| |||||||||||||||||||||| ||||||         ||||||  A
  AACU UUAGUGUUACUUUAGUAUAAAA UAAUAU         ACAAAA  A
CC    C                      A      AAAAAUAAA      UA
Stem-loop sequence UUGAAAAUCACAAUGAAAUCGUAUUUUCAUUGUGGUGUUUUCCAAAAUAAAACAAAAUAAAAAUAUAAUAAAAAUAUGAUUUCAUUGUGAUUCUCAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006606737.2
ncRNA:22   UGCUAAAGUAACACUAAAAGUU   1
  |***||||||*|||||||||||
targets:759   AAAUUUUCAUGGUGAUUUUCAA   780

2.5 PREDICTED: Glycine max uncharacterized LOC102662241 (LOC102662241), mRNA uncharacterized LOC102662241(LOC102662241) coding protein psRNATarget
XM_003541946.3
ncRNA:22   UGCUAAAGUAACACUAAAAGUU   1
  *|**||||||*|||||||||||
targets:1884   CCCUUUUCAUGGUGAUUUUCAA   1905

2.5 PREDICTED: Glycine max protein SAND-like (LOC100814534), transcript variant X2, mRNA protein SAND-like(LOC100814534) coding protein psRNATarget