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BaseInfo

ncRNA ID novel_gma_miR2544
Species Glycine max
Class miRNA
Genome position Chr17:34103936-34104013 [+]
Reference genome Glycine_max_v2.0
Source SRR1451658;SRR1451618
Length 21
Mature sequence(if miRNA) 58 - UUGAAUAACCGUCUUAGAAUG - 78
Stem-loop(if miRNA) --          -AUU   U          UUU    UAU
  UUUUAAGAUG    UUC GAAGGAUUGU   AGAA   A
  ||||||||||    ||| ||||||||||   ||||
  AAGAUUCUGC    AAG UUUUUUAGCA   UCUU   C
GU          CAAU   -          UAU    UCA
Stem-loop sequence UUUUAAGAUGAUUUUCUGAAGGAUUGUUUUAGAAUAUACACUUUCUUAUACGAUUUUUUGAAUAACCGUCUUAGAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006599236.2
ncRNA:21   GUAAGAUUCUGCCAAUAAGUU   1
  ||||=|||||||||||||*||
targets:480   CAUUUUAAGACGGUUAUUGAA   500

2.5 PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA uncharacterized LOC100788736(LOC100788736) coding protein psRNATarget
XM_003534913.2
ncRNA:21   GUAAGAUUCUGCCAAUAAGUU   1
  *=|||*||||||||||||=||
targets:138   AGUUCAAAGACGGUUAUUUAA   158

2.5 PREDICTED: Glycine max uncharacterized LOC100781107 (LOC100781107), mRNA uncharacterized LOC100781107(LOC100781107) coding protein psRNATarget