ncRNA ID | novel_gma_miR2497 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr8:43209807-43209999 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451657 |
Length | 25 |
Mature sequence(if miRNA) | 1 - UUUUAGUAUUAUAUAUAGUGACAUU - 25 |
Stem-loop(if miRNA) |
--               C      U             UU     C         C     -U     AUU                  GUG AUUAA   UGUCAUUAUAUAUAA ACUAAA UUUUUAAUGUAUA  UAAUG AUAUGUAAA UUACA  AAUAA   UUGUGACAAUUAAUUUUG   C     A   ||||||||||||||| |||||| |||||||||||||  ||||| ||||||||| |||||  |||||   ||||||||||||||||||   |     U   ACAGUGAUAUAUAUU UGAUUU AAAGGUUACAUAU  AUUAC UGUAUAUUU AAUGU  UUAUU   AACACUGUUAAUUAAAAU   G     A UU               A      U             UU     C         A     CU     --C                  -AA AUUAU |
Stem-loop sequence | UGUCAUUAUAUAUAACACUAAAUUUUUUAAUGUAUAUUUAAUGCAUAUGUAAACUUACAUAAUAAAUUUUGUGACAAUUAAUUUUGGUGCAUUAAAUAUAUUAGAAUAAAAUUAAUUGUCACAACUUAUUUCUGUAAAUUUAUAUGUCCAUUAUUUAUACAUUGGAAAUUUUAGUAUUAUAUAUAGUGACAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014771337.1 |
|
3.0 | PREDICTED: Glycine max probable pectinesterase 55 (LOC100818719), mRNA | probable pectinesterase 55(LOC100818719) | coding protein | psRNATarget |