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BaseInfo

ncRNA ID novel_gma_miR2497
Species Glycine max
Class miRNA
Genome position Chr8:43209807-43209999 [-]
Reference genome Glycine_max_v2.0
Source SRR1451657
Length 25
Mature sequence(if miRNA) 1 - UUUUAGUAUUAUAUAUAGUGACAUU - 25
Stem-loop(if miRNA) --               C      U             UU     C         C     -U     AUU                  GUG AUUAA
  UGUCAUUAUAUAUAA ACUAAA UUUUUAAUGUAUA  UAAUG AUAUGUAAA UUACA  AAUAA   UUGUGACAAUUAAUUUUG   C     A
  ||||||||||||||| |||||| |||||||||||||  ||||| ||||||||| |||||  |||||   ||||||||||||||||||   |     U
  ACAGUGAUAUAUAUU UGAUUU AAAGGUUACAUAU  AUUAC UGUAUAUUU AAUGU  UUAUU   AACACUGUUAAUUAAAAU   G     A
UU               A      U             UU     C         A     CU     --C                  -AA AUUAU
Stem-loop sequence UGUCAUUAUAUAUAACACUAAAUUUUUUAAUGUAUAUUUAAUGCAUAUGUAAACUUACAUAAUAAAUUUUGUGACAAUUAAUUUUGGUGCAUUAAAUAUAUUAGAAUAAAAUUAAUUGUCACAACUUAUUUCUGUAAAUUUAUAUGUCCAUUAUUUAUACAUUGGAAAUUUUAGUAUUAUAUAUAGUGACAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771337.1
ncRNA:25   UUACAGUGAUAUAUAUUAUGAUUUU   1
  |=*||=|=|*|*|||||||||||||
targets:877   AGAGUUAUUUUCUAUAAUACUAAAA   901

3.0 PREDICTED: Glycine max probable pectinesterase 55 (LOC100818719), mRNA probable pectinesterase 55(LOC100818719) coding protein psRNATarget