Search result

BaseInfo

ncRNA ID novel_gma_miR2477
Species Glycine max
Class miRNA
Genome position Chr5:3681105-3681185 [-]
Reference genome Glycine_max_v2.0
Source SRR1451657
Length 20
Mature sequence(if miRNA) 62 - CUCUCUCGCUUUCUCUGUCU - 81
Stem-loop(if miRNA) --   -         C     CU  C   -CU     A   A
  CUC UCUCGCUUU UCUGU  UU GCU   UCUUC GUG G
  ||| ||||||||| |||||  || |||   ||||| |||
  GGG GGAGCGAGA AGACA  AA UGA   AGAAG UAU U
UU   C         A     AU  -   AAU     A   A
Stem-loop sequence CUCUCUCGCUUUCUCUGUCUUUCGCUCUUCUUCAGUGAGUAUAUAGAAGAUAAAGUAAUAACAGAAAGAGCGAGGCGGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534711.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *||*||||||||||||||||
targets:168   UGAGAGAGAAAGCGAGAGAG   187

1.0 PREDICTED: Glycine max putative uncharacterized protein DDB_G0288537 (LOC100783978), transcript variant X1, mRNA putative uncharacterized protein DDB_G0288537(LOC100783978) coding protein psRNATarget
XM_006586754.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *||*||||||||||||||||
targets:168   UGAGAGAGAAAGCGAGAGAG   187

1.0 PREDICTED: Glycine max putative uncharacterized protein DDB_G0288537 (LOC100783978), transcript variant X2, mRNA putative uncharacterized protein DDB_G0288537(LOC100783978) coding protein psRNATarget
XM_014761850.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *||*||||||||||||||||
targets:14   UGAGAGAGAAAGCGAGAGAG   33

1.0 PREDICTED: Glycine max putative uncharacterized protein DDB_G0288537 (LOC100783978), transcript variant X3, mRNA putative uncharacterized protein DDB_G0288537(LOC100783978) coding protein psRNATarget
XM_006592317.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||=|||||||
targets:445   AGAAAGAGAAAGUGAGAGAG   464

2.5 PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X3, mRNA homeobox-leucine zipper protein HDG2-like(LOC100782260) coding protein psRNATarget
XM_014764655.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||=|||||||
targets:445   AGAAAGAGAAAGUGAGAGAG   464

2.5 PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X4, mRNA homeobox-leucine zipper protein HDG2-like(LOC100782260) coding protein psRNATarget
XM_003539824.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||=|||||||
targets:446   AGAAAGAGAAAGUGAGAGAG   465

2.5 PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X1, mRNA homeobox-leucine zipper protein HDG2-like(LOC100782260) coding protein psRNATarget
XM_014764653.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||=|||||||
targets:447   AGAAAGAGAAAGUGAGAGAG   466

2.5 PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X2, mRNA homeobox-leucine zipper protein HDG2-like(LOC100782260) coding protein psRNATarget
XM_003543317.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*|||||=||||||||||
targets:121   AGAGAGAGAGAGCGAGAGAG   140

2.5 PREDICTED: Glycine max cysteine proteinase inhibitor (LOC100797842), mRNA cysteine proteinase inhibitor(LOC100797842) coding protein psRNATarget
XM_006575222.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:101   AGAGAGAGAAAGAGAGAGAG   120

2.5 PREDICTED: Glycine max uncharacterized LOC100793152 (LOC100793152), mRNA uncharacterized LOC100793152(LOC100793152) coding protein psRNATarget
XM_003535936.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *||*|||||=||||||||||
targets:798   UGAGAGAGAGAGCGAGAGAG   817

2.5 PREDICTED: Glycine max uncharacterized LOC100798105 (LOC100798105), mRNA uncharacterized LOC100798105(LOC100798105) coding protein psRNATarget
XM_014769888.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:82   AGAGAGAGAAAGAGAGAGAG   101

2.5 PREDICTED: Glycine max uncharacterized LOC100792447 (LOC100792447), mRNA uncharacterized LOC100792447(LOC100792447) coding protein psRNATarget
XM_003549770.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:29   AGAAAGAGAAAGAGAGAGAG   48

2.5 PREDICTED: Glycine max putative phospholipid-transporting ATPase 9 (LOC100799312), mRNA putative phospholipid-transporting ATPase 9(LOC100799312) coding protein psRNATarget
XM_014771185.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:291   AGAAAGAGAAAGAGAGAGAG   310

2.5 PREDICTED: Glycine max uncharacterized LOC100797223 (LOC100797223), transcript variant X2, mRNA uncharacterized LOC100797223(LOC100797223) coding protein psRNATarget
XM_006601963.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:206   AGAAAGAGAAAGAGAGAGAG   225

2.5 PREDICTED: Glycine max uncharacterized LOC100797223 (LOC100797223), transcript variant X1, mRNA uncharacterized LOC100797223(LOC100797223) coding protein psRNATarget
XM_003534519.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *||*||||||||=|||||||
targets:29   CGAAAGAGAAAGUGAGAGAG   48

2.5 PREDICTED: Glycine max Bowman-Birk type proteinase inhibitor-like (LOC100814090), mRNA Bowman-Birk type proteinase inhibitor-like(LOC100814090) coding protein psRNATarget
XM_014770751.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *||*||||||||=|||||||
targets:10   UGAAAGAGAAAGUGAGAGAG   29

2.5 PREDICTED: Glycine max Bowman-Birk type proteinase inhibitor-like (LOC106797053), mRNA Bowman-Birk type proteinase inhibitor-like(LOC106797053) coding protein psRNATarget
AK245265.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:1742   AGAGAGAGAAAGAGAGAGAG   1761

2.5 Glycine max cDNA, clone: GMFL01-25-I03 NA coding protein psRNATarget
XM_006598837.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:98   AGAGAGAGAAAGAGAGAGAG   117

2.5 PREDICTED: Glycine max auxin response factor 18 (LOC100795763), transcript variant X1, mRNA auxin response factor 18(LOC100795763) coding protein psRNATarget
XM_006598838.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:98   AGAGAGAGAAAGAGAGAGAG   117

2.5 PREDICTED: Glycine max auxin response factor 18 (LOC100795763), transcript variant X2, mRNA auxin response factor 18(LOC100795763) coding protein psRNATarget
XM_003555418.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |*||||||||||*|||||||
targets:79   ACACAGAGAAAGAGAGAGAG   98

2.5 PREDICTED: Glycine max glycosyltransferase family protein 64 protein C5-like (LOC100790409), mRNA glycosyltransferase family protein 64 protein C5-like(LOC100790409) coding protein psRNATarget
XM_006592577.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:1461   AGAGAGAGAAAGAGAGAGAG   1480

2.5 PREDICTED: Glycine max 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like (LOC100791297), transcript variant X6, mRNA 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like(LOC100791297) coding protein psRNATarget
XM_003529058.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:57   AGAGAGAGAAAGAGAGAGAG   76

2.5 PREDICTED: Glycine max auxin response factor 9-like (LOC100799088), mRNA auxin response factor 9-like(LOC100799088) coding protein psRNATarget
XM_003533059.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:55   AGAGAGAGAAAGAGAGAGAG   74

2.5 PREDICTED: Glycine max cationic amino acid transporter 1-like (LOC100785183), transcript variant X1, mRNA cationic amino acid transporter 1-like(LOC100785183) coding protein psRNATarget
XM_014773010.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:1249   AGAGAGAGAAAGAGAGAGAG   1268

2.5 PREDICTED: Glycine max 40S ribosomal protein S12-like (LOC100800815), transcript variant X1, mRNA 40S ribosomal protein S12-like(LOC100800815) coding protein psRNATarget
XM_006605500.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:1216   AGAGAGAGAAAGAGAGAGAG   1235

2.5 PREDICTED: Glycine max 40S ribosomal protein S12-like (LOC100800815), transcript variant X3, mRNA 40S ribosomal protein S12-like(LOC100800815) coding protein psRNATarget
XM_003549846.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:8   AGAGAGAGAAAGAGAGAGAG   27

2.5 PREDICTED: Glycine max AT-hook motif nuclear-localized protein 24-like (LOC100795257), mRNA AT-hook motif nuclear-localized protein 24-like(LOC100795257) coding protein psRNATarget
XM_014763828.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |*||||||||||*|||||||
targets:189   ACACAGAGAAAGAGAGAGAG   208

2.5 PREDICTED: Glycine max transcription factor RAX3-like (LOC106795158), mRNA transcription factor RAX3-like(LOC106795158) coding protein psRNATarget
AK285442.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:47   AGAGAGAGAAAGAGAGAGAG   66

2.5 Glycine max cDNA, clone: GMFL01-09-M24 NA coding protein psRNATarget
AK244012.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:36   AGAGAGAGAAAGAGAGAGAG   55

2.5 Glycine max cDNA, clone: GMFL01-01-N18 NA coding protein psRNATarget
AB016063.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:30   AGAGAGAGAAAGAGAGAGAG   49

2.5 Glycine max mRNA for mitochondrial phosphate transporter, complete cds NA coding protein psRNATarget
NM_001250375.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:30   AGAGAGAGAAAGAGAGAGAG   49

2.5 Glycine max mitochondrial phosphate transporter (LOC548006), mRNA mitochondrial phosphate transporter(LOC548006) coding protein psRNATarget
XM_003551965.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:224   AGAGAGAGAAAGAGAGAGAG   243

2.5 PREDICTED: Glycine max spermidine synthase 2 (LOC100776863), transcript variant X1, mRNA spermidine synthase 2(LOC100776863) coding protein psRNATarget
NM_001250253.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:349   AGAAAGAGAAAGAGAGAGAG   368

2.5 Glycine max salt-tolerance protein (LOC732574), mRNA salt-tolerance protein(LOC732574) coding protein psRNATarget
XM_006589939.2
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:557   AGAGAGAGAAAGAGAGAGAG   576

2.5 PREDICTED: Glycine max uncharacterized LOC100783295 (LOC100783295), mRNA uncharacterized LOC100783295(LOC100783295) coding protein psRNATarget
DQ234265.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:214   AGAAAGAGAAAGAGAGAGAG   233

2.5 Glycine max salt-tolerance protein mRNA, complete cds NA coding protein psRNATarget
NM_001250253.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:214   AGAAAGAGAAAGAGAGAGAG   233

2.5 Glycine max salt-tolerance protein (LOC732574), mRNA salt-tolerance protein(LOC732574) coding protein psRNATarget
XM_003517108.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  ||*|||||||||*|||||||
targets:10   AGCCAGAGAAAGAGAGAGAG   29

2.5 PREDICTED: Glycine max NEP1-interacting protein 1-like (LOC100807641), mRNA NEP1-interacting protein 1-like(LOC100807641) coding protein psRNATarget
XM_003553101.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*|||||||||*||||||
targets:116   AGAGAGAGAAAGCAAGAGAG   135

2.5 PREDICTED: Glycine max uncharacterized LOC100785600 (LOC100785600), mRNA uncharacterized LOC100785600(LOC100785600) coding protein psRNATarget
BT090815.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:11   AGAAAGAGAAAGAGAGAGAG   30

2.5 Soybean clone JCVI-FLGm-5M4 unknown mRNA NA coding protein psRNATarget
BT097403.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |*||||||||||*|||||||
targets:55   ACACAGAGAAAGAGAGAGAG   74

2.5 Soybean clone JCVI-FLGm-16K1 unknown mRNA NA coding protein psRNATarget
BT093206.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  |||*||||||||*|||||||
targets:67   AGAGAGAGAAAGAGAGAGAG   86

2.5 Soybean clone JCVI-FLGm-17A13 unknown mRNA NA coding protein psRNATarget
XM_003556137.3
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *|||||||||||*||||||*
targets:46   UGACAGAGAAAGAGAGAGAA   65

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 2 (LOC100789884), mRNA somatic embryogenesis receptor kinase 2(LOC100789884) coding protein psRNATarget
XM_014762499.1
ncRNA:20   UCUGUCUCUUUCGCUCUCUC   1
  *|||||||||||*||||||*
targets:56   UGACAGAGAAAGAGAGAGAA   75

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase (SERK1), transcript variant X1, mRNA somatic embryogenesis receptor kinase(SERK1) coding protein psRNATarget
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