Search result

BaseInfo

ncRNA ID novel_gma_miR2434
Species Glycine max
Class miRNA
Genome position Chr10:1818296-1818382 [+]
Reference genome Glycine_max_v2.0
Source SRR1451657
Length 21
Mature sequence(if miRNA) 1 - ACAUUGUAUUGUCUCUCUUCU - 21
Stem-loop(if miRNA) A    G -     C      ----  UCU     U   AUAUUUU
 CAUU U AUUGU UCUCUU    CU   UUGUU AUU       U
 |||| | ||||| ||||||    ||   ||||| |||       C
 GUGA A UAAUA AGAGAA    GA   AACAA UAA       U
A    G C     A      CUAU  -UU     U   AACAUCG
Stem-loop sequence ACAUUGUAUUGUCUCUCUUCUUCUUUGUUUAUUAUAUUUUUCUGCUACAAAAUUAACAAUUAGUAUCAAGAGAAAUAAUCAGAGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006605659.2
ncRNA:21   UCUUCUCUCUGUUAUGUUACA   1
  |*|||||||||||||||||**
targets:1165   ACAAGAGAGACAAUACAAUAG   1185

2.5 PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669331), transcript variant X2, mRNA F-box/kelch-repeat protein At3g23880-like(LOC102669331) coding protein psRNATarget
XM_006605658.2
ncRNA:21   UCUUCUCUCUGUUAUGUUACA   1
  |*|||||||||||||||||**
targets:1165   ACAAGAGAGACAAUACAAUAG   1185

2.5 PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669331), transcript variant X1, mRNA F-box/kelch-repeat protein At3g23880-like(LOC102669331) coding protein psRNATarget
XM_006601486.1
ncRNA:21   UCUUCUCUCUGUUAUGUUACA   1
  |||=**|||||||||||||||
targets:460   AGAGCUGAGACAAUACAAUGU   480

3.0 PREDICTED: Glycine max uncharacterized LOC102665863 (LOC102665863), mRNA uncharacterized LOC102665863(LOC102665863) coding protein psRNATarget