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BaseInfo

ncRNA ID	novel_gma_miR2424
Species	Glycine max
Class	miRNA
Genome position	Chr12:4447016-4447158 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1294484
Length	24
Mature sequence(if miRNA)	1 - CUGAGAAAAGGACAGUAGAGAAAC - 24
Stem-loop(if miRNA)	--     AG    U      -G    ----         A   ------------------------------CCCCU  AAAAUCACA   UUCUC  UUGU CCUUUU  CAGU    UAUUCUUGU CUG                                   UG         C   |||||  |||| ||||||  ||||    ||||||||| |||                                   ||         A   AAGAG  GACA GGAAAA  GUCG    AUAGGGACA GAC                                   GU         G CA     AU    -      GA    ACCG         C   AAGUACAUCAACACAAUUAUAAAUUAAAACACUAA  UAAAAUUUU
Stem-loop sequence	UUCUCAGUUGUUCCUUUUGCAGUUAUUCUUGUACUGCCCCUUGAAAAUCACACAGUUUUAAAAUUGAAUCACAAAAUUAAAUAUUAACACAACUACAUGAACAGCACAGGGAUAGCCAGCUGAGAAAAGGACAGUAGAGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006585970.2	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:1220   GUGUAUCUAUUGUCAUUUUCUCAG   1243 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X1, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_003530664.3	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:1641   GUGUAUCUAUUGUCAUUUUCUCAG   1664 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X12, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_014779369.1	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:343   GUGUAUCUAUUGUCAUUUUCUCAG   366 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X11, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_014779367.1	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:380   GUGUAUCUAUUGUCAUUUUCUCAG   403 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X9, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_006585976.2	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:438   GUGUAUCUAUUGUCAUUUUCUCAG   461 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X5, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_006585974.2	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:443   GUGUAUCUAUUGUCAUUUUCUCAG   466 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X2, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_006585975.2	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:444   GUGUAUCUAUUGUCAUUUUCUCAG   467 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X3, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_006585977.2	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:449   GUGUAUCUAUUGUCAUUUUCUCAG   472 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X4, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_014779368.1	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:531   GUGUAUCUAUUGUCAUUUUCUCAG   554 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X10, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_014779365.1	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:536   GUGUAUCUAUUGUCAUUUUCUCAG   559 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X8, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_014779364.1	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:537   GUGUAUCUAUUGUCAUUUUCUCAG   560 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X7, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_014779363.1	ncRNA:24   CAAAGAGAUGACAGGAAAAGAGUC   1   ||*|*||||=||||*||||||||| targets:542   GUGUAUCUAUUGUCAUUUUCUCAG   565 Target Full Sequence	2.5	PREDICTED: Glycine max TMV resistance protein N-like (LOC100816690), transcript variant X6, mRNA	TMV resistance protein N-like(LOC100816690)	coding protein	psRNATarget
XM_006574334.2	ncRNA:24   CAAAGAGAU-GACAGGAAAAGAGUC   1   |**|=||||-||||||||||||||* targets:47   GACUUUCUAUCUGUCCUUUUCUCAC   71 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100784326 (LOC100784326), transcript variant X1, mRNA	uncharacterized LOC100784326(LOC100784326)	coding protein	psRNATarget