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BaseInfo

ncRNA ID novel_gma_miR2415
Species Glycine max
Class miRNA
Genome position Chr4:26568212-26568321 [+]
Reference genome Glycine_max_v2.0
Source SRR1451655
Length 24
Mature sequence(if miRNA) 87 - UUGAUGAGAAUUGAUUGAUAAACU - 110
Stem-loop(if miRNA) --      UUGG         UG  U  -     UUUCCUU    AUUAUA        
  UUUAUU    GAUUUUUAU  AA UA CAAUU       UAUG      AAUACAAUA
  ||||||    |||||||||  || || |||||       ||||      ||||||||U
  AAAUAG    UUAAGAGUA  UU GU GUUAA       AUGC      UUGUGUUAU
UC      UUAG         GU  U  A     -----UC    ---AUC        
Stem-loop sequence UUUAUUUUGGGAUUUUUAUUGAAUUACAAUUUUUCCUUUAUGAUUAUAAAUACAAUAUUAUUGUGUUCUACGUACUAAUUGAUGUUUUGAUGAGAAUUGAUUGAUAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768810.1
ncRNA:24   UCAAAUAGUUAGUUAAGAGUAGUU   1
  =*||*=|||||*||||||||||||
targets:5415   GCUUGGUCAAUAAAUUCUCAUCAA   5438

2.5 PREDICTED: Glycine max vacuolar protein sorting-associated protein 8 homolog (LOC100785710), mRNA vacuolar protein sorting-associated protein 8 homolog(LOC100785710) coding protein psRNATarget
XM_006583141.2
ncRNA:24   UCAAAUAGUUAGUUAAGAGUAGUU   1
  =*||*=|||||*||||||||||||
targets:5415   GCUUGGUCAAUAAAUUCUCAUCAA   5438

2.5 PREDICTED: Glycine max vacuolar protein sorting-associated protein 8 homolog (LOC100780869), mRNA vacuolar protein sorting-associated protein 8 homolog(LOC100780869) coding protein psRNATarget