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BaseInfo

ncRNA ID novel_gma_miR2393
Species Glycine max
Class miRNA
Genome position Chr1:53489939-53489998 [-]
Reference genome Glycine_max_v2.0
Source SRR1294483;SRR1451621
Length 24
Mature sequence(if miRNA) 37 - AGAGAUUUUCGUGGUUUAUGGAUU - 60
Stem-loop(if miRNA) --A      UU    GU   -  G   AGU
   GAGAUU  CGUG  UUA UG AUU   C
   ||||||  ||||  ||| || |||   A
   UUCUAA  GCGC  AAU AC UAA   A
AAA      GG    UU   G  G   AUA
Stem-loop sequence AGAGAUUUUCGUGGUUUAUGGAUUAGUCAAAUAAAUGCAGUAAUUCGCGGGAAUCUUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014767652.1
ncRNA:24   UUAGGUAUUUGGUGCUUUUAGAGA   1
  *=|*=|||||*||||||=||||||
targets:623   UGUAUAUAAAGCACGAAGAUCUCU   646

2.5 PREDICTED: Glycine max uncharacterized LOC106796100 (LOC106796100), mRNA uncharacterized LOC106796100(LOC106796100) coding protein psRNATarget
XM_014770450.1
ncRNA:24   UUAGGUAUUUGGUGCUUUUAGAGA   1
  *=|*=|||||*||||||=||||||
targets:443   UGUAUAUAAAGCACGAAGAUCUCU   466

2.5 PREDICTED: Glycine max uncharacterized LOC106796841 (LOC106796841), mRNA uncharacterized LOC106796841(LOC106796841) coding protein psRNATarget
XM_014767501.1
ncRNA:24   UUAGGUAUUUGGUGCUUUUAGAGA   1
  *=|*=|||||*||||||=||||||
targets:773   UGUAUAUAAAGCACGAAGAUCUCU   796

2.5 PREDICTED: Glycine max uncharacterized LOC106796055 (LOC106796055), partial mRNA uncharacterized LOC106796055(LOC106796055) coding protein psRNATarget
XM_014770488.1
ncRNA:24   UUAGGUAUUUGGUGCUUUUAGAGA   1
  *=|*=|||||*||||||=||||||
targets:1946   UGUAUAUAAAGCACGAAGAUCUCU   1969

2.5 PREDICTED: Glycine max uncharacterized LOC106796856 (LOC106796856), mRNA uncharacterized LOC106796856(LOC106796856) coding protein psRNATarget
XM_003552628.3
ncRNA:24   UUAGGUAUUUGGUGCUUUUAGAGA   1
  *||*|*|||||*||||||||||||
targets:3640   CAUACUUAAACGACGAAAAUCUCU   3663

2.5 PREDICTED: Glycine max ABC transporter B family member 6-like (LOC100779000), mRNA ABC transporter B family member 6-like(LOC100779000) coding protein psRNATarget
XM_003518611.3
ncRNA:24   UUAGGUAUUUGGUGCUUUUAGAGA   1
  *||*|*|||||*||||||||||||
targets:3662   CAUACUUAAACGACGAAAAUCUCU   3685

2.5 PREDICTED: Glycine max ABC transporter B family member 20-like (LOC100789116), mRNA ABC transporter B family member 20-like(LOC100789116) coding protein psRNATarget