ncRNA ID | novel_gma_miR2391 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr19:2474151-2474371 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451655;SRR2968974 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUUUUCAUUUUCGUCCCUACAA - 22 |
Stem-loop(if miRNA) |
--                  ACAAUUUUUUUU    CU  GA    GC            -C        CG                    GU     GAACA   C   A   UUUUUCAUUUUCGUCCCU            UUGU  UA  UCUU  AAAAUGUGUUUG  UUGUUUUU  UCCUUAAAACAUUUUAGAUA  GUUUU     AUA AAA A   ||||||||||||||||||            ||||  ||  ||||  ||||||||||||  ||||||||  ||||||||||||||||||||  |||||     ||| ||| U   AAAAAGUAAAAGUAGGGA            AACA  AU  AGAA  UUUUACACAAAC  AAUAAAAA  AGGAAUUUUGUGAAAUCUAU  UAAAA     UAU UUU A AA                  CAUUUUUAUUUU    --  GA    AA            AA        -A                    AG     AGUAA   A   U |
Stem-loop sequence | UUUUUCAUUUUCGUCCCUACAAUUUUUUUUUUGUCUUAGAUCUUGCAAAAUGUGUUUGCUUGUUUUUCGUCCUUAAAACAUUUUAGAUAGUGUUUUGAACAAUACAAAAAUAUUUUAUAUAAUGAAAAAUGAUAUCUAAAGUGUUUUAAGGAAAAAAAUAAAACAAACACAUUUUAAAAGAAGUAACAAUUUUAUUUUUACAGGGAUGAAAAUGAAAAAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006585579.2 |
|
2.5 | PREDICTED: Glycine max WD repeat-containing protein 43-like (LOC100796828), transcript variant X4, mRNA | WD repeat-containing protein 43-like(LOC100796828) | coding protein | psRNATarget | |||||||||
XM_006585579.2 |
|
2.5 | PREDICTED: Glycine max WD repeat-containing protein 43-like (LOC100796828), transcript variant X4, mRNA | WD repeat-containing protein 43-like(LOC100796828) | coding protein | psRNATarget |