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BaseInfo

ncRNA ID novel_gma_miR2391
Species Glycine max
Class miRNA
Genome position Chr19:2474151-2474371 [+]
Reference genome Glycine_max_v2.0
Source SRR1451655;SRR2968974
Length 22
Mature sequence(if miRNA) 1 - UUUUUCAUUUUCGUCCCUACAA - 22
Stem-loop(if miRNA) --                  ACAAUUUUUUUU    CU  GA    GC            -C        CG                    GU     GAACA   C   A
  UUUUUCAUUUUCGUCCCU            UUGU  UA  UCUU  AAAAUGUGUUUG  UUGUUUUU  UCCUUAAAACAUUUUAGAUA  GUUUU     AUA AAA A
  ||||||||||||||||||            ||||  ||  ||||  ||||||||||||  ||||||||  ||||||||||||||||||||  |||||     ||| ||| U
  AAAAAGUAAAAGUAGGGA            AACA  AU  AGAA  UUUUACACAAAC  AAUAAAAA  AGGAAUUUUGUGAAAUCUAU  UAAAA     UAU UUU A
AA                  CAUUUUUAUUUU    --  GA    AA            AA        -A                    AG     AGUAA   A   U
Stem-loop sequence UUUUUCAUUUUCGUCCCUACAAUUUUUUUUUUGUCUUAGAUCUUGCAAAAUGUGUUUGCUUGUUUUUCGUCCUUAAAACAUUUUAGAUAGUGUUUUGAACAAUACAAAAAUAUUUUAUAUAAUGAAAAAUGAUAUCUAAAGUGUUUUAAGGAAAAAAAUAAAACAAACACAUUUUAAAAGAAGUAACAAUUUUAUUUUUACAGGGAUGAAAAUGAAAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006585579.2
ncRNA:22   AACAUCCCUGCUUUUACUUUUU   1
  *||||||*||*|||||||||||
targets:302   AUGUAGGAACUAAAAUGAAAAA   323

2.5 PREDICTED: Glycine max WD repeat-containing protein 43-like (LOC100796828), transcript variant X4, mRNA WD repeat-containing protein 43-like(LOC100796828) coding protein psRNATarget
XM_006585579.2
ncRNA:22   AACAUCCCUGCUUUUACUUUUU   1
  *|*|||||||*||||||||||*
targets:100   AUAUAGGGACCAAAAUGAAAAU   121

2.5 PREDICTED: Glycine max WD repeat-containing protein 43-like (LOC100796828), transcript variant X4, mRNA WD repeat-containing protein 43-like(LOC100796828) coding protein psRNATarget