Search result

BaseInfo

ncRNA ID novel_gma_miR2386
Species Glycine max
Class miRNA
Genome position Chr19:3494795-3494880 [-]
Reference genome Glycine_max_v2.0
Source SRR1451655
Length 21
Mature sequence(if miRNA) 66 - UUCUGUUUUCAAAGAUUUGUA - 86
Stem-loop(if miRNA) --          AAA          --    ---    UG    C
  UUCUGUUUUC   GAUUUGUACA  AGAC   ACAA  AAAG G
  ||||||||||   ||||||||||  ||||   ||||  |||| A
  AGGACAAAAG   CUAAACAUGU  UUUG   UGUU  UUUC U
AA          CUG          CC    UCU    GU    U
Stem-loop sequence UUCUGUUUUCAAAGAUUUGUACAAGACACAAUGAAAGCGAUUCUUUUGUUGUUCUGUUUCCUGUACAAAUCGUCGAAAACAGGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763007.1
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  |*||||*||||||||||||||
targets:2020   UCCAAAACUUUGAAAACAGAA   2040

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100781309), transcript variant X3, mRNA ethylene-insensitive protein 2-like(LOC100781309) coding protein psRNATarget
XM_006588736.2
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  |*||||*||||||||||||||
targets:2276   UCCAAAACUUUGAAAACAGAA   2296

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100781309), transcript variant X2, mRNA ethylene-insensitive protein 2-like(LOC100781309) coding protein psRNATarget
XM_006588735.2
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  |*||||*||||||||||||||
targets:2383   UCCAAAACUUUGAAAACAGAA   2403

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100781309), transcript variant X1, mRNA ethylene-insensitive protein 2-like(LOC100781309) coding protein psRNATarget
XM_003542488.3
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  |*||||*||||||||||||||
targets:2510   UCCAAAACUUUGAAAACAGAA   2530

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100801190), mRNA ethylene-insensitive protein 2-like(LOC100801190) coding protein psRNATarget
XM_006604078.2
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  |*|||||||||||||||||=|
targets:306   UUCAAAUCUUUGAAAACAGGA   326

1.5 PREDICTED: Glycine max putative nuclease HARBI1 (LOC102660080), mRNA putative nuclease HARBI1(LOC102660080) coding protein psRNATarget
XM_003528826.3
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  |=||||*|||||||||*||||
targets:458   UGCAAAGCUUUGAAAAGAGAA   478

2.5 PREDICTED: Glycine max methionine adenosyltransferase 2 subunit beta-like (LOC100808137), mRNA methionine adenosyltransferase 2 subunit beta-like(LOC100808137) coding protein psRNATarget
XM_003546580.3
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  ***|||||||||||||*||||
targets:2425   AUGAAAUCUUUGAAAAGAGAA   2445

2.5 PREDICTED: Glycine max trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like (LOC100785885), transcript variant X3, mRNA trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like(LOC100785885) coding protein psRNATarget
XM_006597914.2
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  ***|||||||||||||*||||
targets:2506   AUGAAAUCUUUGAAAAGAGAA   2526

2.5 PREDICTED: Glycine max trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like (LOC100785885), transcript variant X2, mRNA trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like(LOC100785885) coding protein psRNATarget
XM_006597913.2
ncRNA:21   AUGUUUAGAAACUUUUGUCUU   1
  ***|||||||||||||*||||
targets:2517   AUGAAAUCUUUGAAAAGAGAA   2537

2.5 PREDICTED: Glycine max trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like (LOC100785885), transcript variant X1, mRNA trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like(LOC100785885) coding protein psRNATarget
XM_003554838.3
ncRNA:21   AUGU-UUAGAAACUUUUGUCUU   1
  *=||-||*||||||||||||||
targets:250   GGCAGAAGCUUUGAAAACAGAA   271

3.0 PREDICTED: Glycine max putative NAC domain-containing protein 94 (LOC100778120), mRNA putative NAC domain-containing protein 94(LOC100778120) coding protein psRNATarget