Search result

BaseInfo

ncRNA ID	novel_gma_miR2350
Species	Glycine max
Class	miRNA
Genome position	Chr1:60096-60276 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451655
Length	22
Mature sequence(if miRNA)	160 - UUUUUGGUCCCCCUAUAAUGCU - 181
Stem-loop(if miRNA)	--UUU         C                   U           AGAUGCUUU         CUCAACGU   -  CAUGGAUAAUCAAUUAACGG      UUGGUCCCC UAUAAUGCUCGAUCUGCAA UUUGGUCUCCU         UAUUUUUCA        UUG AC                    U      ||||||||| ||||||||||||||||||| |||||||||||         |||||||||        ||| ||      AACCAGGGG AUAUUACGAGUUAGGCGUU AAACCAGGGGG         AUAAAAAGU        GUC CU                    C GUAAC         -                   U           ---------         ----UUUA   G  AAAACCAAGAAGACAAUCAA
Stem-loop sequence	UUUUUGGUCCCCCUAUAAUGCUCGAUCUGCAAUUUUGGUCUCCUAGAUGCUUUUAUUUUUCACUCAACGUUUGACCAUGGAUAAUCAAUUAACGGUCAACUAACAGAAGAACCAAAAUCGCUGAUUUUGAAAAAUAGGGGGACCAAAUUUGCGGAUUGAGCAUUAUAGGGGACCAACAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006598012.2	ncRNA:22   UCGUAAUAUCCCCCUGGUUUUU   1   ***||||||||||||||||||* targets:398   UAAAUUAUAGGGGGACCAAAAU   419 Target Full Sequence	1.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like (LOC100810110), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like(LOC100810110)	coding protein	psRNATarget
XM_003543801.3	ncRNA:22   UCGUAAUAUCCCCCUGGUUUUU   1   ||*||||*||||*||||||||| targets:2508   AGGAUUAAAGGGAGACCAAAAA   2529 Target Full Sequence	2.5	PREDICTED: Glycine max ATP-dependent RNA helicase SUV3L, mitochondrial (LOC100777114), mRNA	ATP-dependent RNA helicase SUV3L, mitochondrial(LOC100777114)	coding protein	psRNATarget
XM_003554836.3	ncRNA:22   UCGUAAUAUCCCCCUGGUUUUU   1   ||*||||*||||*||||||||| targets:2532   AGGAUUAAAGGGAGACCAAAAA   2553 Target Full Sequence	2.5	PREDICTED: Glycine max ATP-dependent RNA helicase SUV3L, mitochondrial-like (LOC100777064), transcript variant X1, mRNA	ATP-dependent RNA helicase SUV3L, mitochondrial-like(LOC100777064)	coding protein	psRNATarget
XM_014776582.1	ncRNA:22   UCGUAAUAUCCCCCUGGUUUUU   1   ***||||||*|||||||||||* targets:1697   UAAAUUAUAAGGGGACCAAAAU   1718 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein SYNPCC7002_A1590-like (LOC100797206), transcript variant X2, mRNA	uncharacterized protein SYNPCC7002_A1590-like(LOC100797206)	coding protein	psRNATarget