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BaseInfo

ncRNA ID novel_gma_miR2349
Species Glycine max
Class miRNA
Genome position Chr12:3837079-3837179 [+]
Reference genome Glycine_max_v2.0
Source SRR1451655;SRR1451658
Length 21
Mature sequence(if miRNA) 1 - UCUGCAGUAAAAGAGAAUAGU - 21
Stem-loop(if miRNA) --                      --   UAA   GCACAUUUUAAGUCAUGU
  UCUGCAGUAAAAGAGAAUAGUG  UGG   GGU                  G
  ||||||||||||||||||||||  |||   |||
  AGACGUCAUUUUCUUUUAUCAU  ACC   UCG                  G
GG                      AA   ---   CUAUUGAAUAAAUAACCA
Stem-loop sequence UCUGCAGUAAAAGAGAAUAGUGUGGUAAGGUGCACAUUUUAAGUCAUGUGGACCAAUAAAUAAGUUAUCGCUCCAAAUACUAUUUUCUUUUACUGCAGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003521863.3
ncRNA:21   UGAUAAGAGAAAAUGACGUCU   1
  |=|*|||||||||||||||||
targets:1711   AUUCUUCUCUUUUACUGCAGA   1731

1.0 PREDICTED: Glycine max K(+) efflux antiporter 2, chloroplastic-like (LOC100800772), transcript variant X1, mRNA K(+) efflux antiporter 2, chloroplastic-like(LOC100800772) coding protein psRNATarget
XM_014777836.1
ncRNA:21   UGAUAAGAGAAAAUGACGUCU   1
  |=|*|||||||||||||||||
targets:1730   AUUCUUCUCUUUUACUGCAGA   1750

1.0 PREDICTED: Glycine max K(+) efflux antiporter 2, chloroplastic-like (LOC100791174), transcript variant X2, mRNA K(+) efflux antiporter 2, chloroplastic-like(LOC100791174) coding protein psRNATarget
XM_003529906.3
ncRNA:21   UGAUAAGAGAAAAUGACGUCU   1
  |=|*|||||||||||||||||
targets:1734   AUUCUUCUCUUUUACUGCAGA   1754

1.0 PREDICTED: Glycine max K(+) efflux antiporter 2, chloroplastic-like (LOC100791174), transcript variant X1, mRNA K(+) efflux antiporter 2, chloroplastic-like(LOC100791174) coding protein psRNATarget
XM_006582944.2
ncRNA:21   UGAUAAGAGAAAAUGACGUCU   1
  *=|||||*|||||||||||*|
targets:750   UUUAUUCCCUUUUACUGCAAA   770

2.5 PREDICTED: Glycine max transcription factor MYB26 (LOC100785147), mRNA transcription factor MYB26(LOC100785147) coding protein psRNATarget
XM_006585452.2
ncRNA:21   UGAUAAGAGAAAAUGACGUCU   1
  *=|||||*|||||||||||*|
targets:763   UUUAUUCCCUUUUACUGCAAA   783

2.5 PREDICTED: Glycine max transcription factor MYB26-like (LOC102665409), mRNA transcription factor MYB26-like(LOC102665409) coding protein psRNATarget