Search result

BaseInfo

ncRNA ID	novel_gma_miR2307
Species	Glycine max
Class	miRNA
Genome position	Chr7:41251817-41251884 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451654
Length	24
Mature sequence(if miRNA)	45 - AAAGAAUUGUGUUUUCGUUGUACU - 68
Stem-loop(if miRNA)	--AAA           UC      CUAAGUG GG      GAAUUGUGUUU  GUUGUA       U  A      |||||||||||  ||||||       |      CUUAGCACAAA  CAACAU       A  U GUUAC           GA      AUAAAAA AA
Stem-loop sequence	AAAGAAUUGUGUUUUCGUUGUACUAAGUGUGGAUAAAAAAAAUAUACAACAGAAACACGAUUCCAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003533711.3	ncRNA:24   UCAUGUUGCUUUUGUGUUAAGAAA   1   =*||=|||*|||||||||||*||| targets:85   GUUAUAACCAAAACACAAUUAUUU   108 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100783246 (LOC100783246), transcript variant X1, mRNA	uncharacterized LOC100783246(LOC100783246)	coding protein	psRNATarget
BT093972.1	ncRNA:24   UCAUGUUGCUUUU-GUGUUAAGAAA   1   ****|||||||||-||||||||||| targets:183   CACCCAACGAAAAGCACAAUUCUUU   207 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-24F17 unknown mRNA	NA	coding protein	psRNATarget
XM_006583991.2	ncRNA:24   UCAUGUUGCUUUU-GUGUUAAGAAA   1   ****|||||||||-||||||||||| targets:234   CACCCAACGAAAAGCACAAUUCUUU   258 Target Full Sequence	3.0	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100797866), transcript variant X5, mRNA	probable protein phosphatase 2C 35(LOC100797866)	coding protein	psRNATarget
XM_006583990.2	ncRNA:24   UCAUGUUGCUUUU-GUGUUAAGAAA   1   ****|||||||||-||||||||||| targets:234   CACCCAACGAAAAGCACAAUUCUUU   258 Target Full Sequence	3.0	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100797866), transcript variant X4, mRNA	probable protein phosphatase 2C 35(LOC100797866)	coding protein	psRNATarget
XM_003529550.3	ncRNA:24   UCAUGUUGCUUUU-GUGUUAAGAAA   1   ****|||||||||-||||||||||| targets:231   CACCCAACGAAAAGCACAAUUCUUU   255 Target Full Sequence	3.0	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100797866), transcript variant X1, mRNA	probable protein phosphatase 2C 35(LOC100797866)	coding protein	psRNATarget
XM_006583989.2	ncRNA:24   UCAUGUUGCUUUU-GUGUUAAGAAA   1   ****|||||||||-||||||||||| targets:233   CACCCAACGAAAAGCACAAUUCUUU   257 Target Full Sequence	3.0	PREDICTED: Glycine max probable protein phosphatase 2C 35 (LOC100797866), transcript variant X3, mRNA	probable protein phosphatase 2C 35(LOC100797866)	coding protein	psRNATarget