Search result

BaseInfo

ncRNA ID	novel_gma_miR2303
Species	Glycine max
Class	miRNA
Genome position	Chr11:17869835-17870020 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451654
Length	21
Mature sequence(if miRNA)	1 - UUUGCCCAUUCACCUAAUUGU - 21
Stem-loop(if miRNA)	--UUU          C                                   A       UG     -  --UU  --A   -    AGG   A   U      GCCCAUUCAC UAAUUGUUGGGUGCACUAGCAAUGUUGCUGGGUGC CCUAGCA  UCCCA CU    GU   UCU GUGU   UUC UGU A      |||||||||| ||||||||||||||||||||||||||||||||||| |||||||  ||||| ||    ||   ||| ||||   ||| ||| G      CGGGUAAGUG AUUAAUAACCCACGUGGUCGUUACAACGACCCACG GGAUCGU  AGGGU GA    CG   AGA CACA   GAG ACA G UAAAU          U                                   C       UG     U  UUGU  GUA   A    ---   A   C
Stem-loop sequence	UUUGCCCAUUCACCUAAUUGUUGGGUGCACUAGCAAUGUUGCUGGGUGCACCUAGCAUGUCCCACUUUGUAUCUGUGUAGGUUCAUGUUAGGCACAAGAGACACAAGAAUGGCUGUUAGUUGGGAGUUGCUAGGCGCACCCAGCAACAUUGCUGGUGCACCCAAUAAUUAUGUGAAUGGGCUAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774424.1	ncRNA:21   UGUUAAUCCACUUACCCGUUU   1   |===*|||||||||||||||| targets:1321   AUGGGUAGGUGAAUGGGCAAA   1341 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100780634 (LOC100780634), transcript variant X3, mRNA	uncharacterized LOC100780634(LOC100780634)	coding protein	psRNATarget
XM_003523500.3	ncRNA:21   UGUUAAUCCACUUACCCGUUU   1   |===*|||||||||||||||| targets:1633   AUGGGUAGGUGAAUGGGCAAA   1653 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100780634 (LOC100780634), transcript variant X2, mRNA	uncharacterized LOC100780634(LOC100780634)	coding protein	psRNATarget
XM_006577903.2	ncRNA:21   UGUUAAUCCACUUACCCGUUU   1   |===*|||||||||||||||| targets:1713   AUGGGUAGGUGAAUGGGCAAA   1733 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100780634 (LOC100780634), transcript variant X1, mRNA	uncharacterized LOC100780634(LOC100780634)	coding protein	psRNATarget