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BaseInfo

ncRNA ID novel_gma_miR2298
Species Glycine max
Class miRNA
Genome position Chr5:10037946-10038042 [+]
Reference genome Glycine_max_v2.0
Source SRR1451654
Length 24
Mature sequence(if miRNA) 1 - AUAAAUUGAGGAUUCUAAGACGGU - 24
Stem-loop(if miRNA) --A    UU   G                        C          G
   UAAA  GAG AUUCUAAGACGGUUUCUCAAAGAU GUCUUAGAAU U
   ||||  ||| |||||||||||||||||||||||| ||||||||||
   AUUU  UUU UAAGAUUCUGUCAAAGAGUUUCUG CAGAAUCUUA A
ACA    -U   G                        A          C
Stem-loop sequence AUAAAUUGAGGAUUCUAAGACGGUUUCUCAAAGAUCGUCUUAGAAUGUACAUUCUAAGACAGUCUUUGAGAAACUGUCUUAGAAUGUUUUUUUAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763138.1
ncRNA:24   UGG-CAGAAUCUUAGGAGUUAAAUA   1
  |||-||||||||||||||||||||*
targets:1478   ACCUGUCUUAGAAUCCUCAAUUUAC   1502

1.0 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget
XM_006589010.2
ncRNA:24   UGG-CAGAAUCUUAGGAGUUAAAUA   1
  |||-||||||||||||||||||||*
targets:2187   ACCUGUCUUAGAAUCCUCAAUUUAC   2211

1.0 PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA uncharacterized LOC100806242(LOC100806242) coding protein psRNATarget
XM_014777564.1
ncRNA:24   UGGC---AGAAUCUUAGGAGUUAAAUA   1
  |==|---|||||*||||=|||||||||
targets:125   AUUGACAUCUUAAAAUCUUCAAUUUAU   151

2.5 PREDICTED: Glycine max 2-hydroxyisoflavanone synthase-like (LOC106799383), mRNA 2-hydroxyisoflavanone synthase-like(LOC106799383) coding protein psRNATarget