ncRNA ID | novel_gma_miR2228 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr11:32236903-32237011 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451654 |
Length | 24 |
Mature sequence(if miRNA) | 86 - CUUCCGCUGUUGUUACUUUCAACU - 109 |
Stem-loop(if miRNA) |
--      A                 GG          G U  -  - C     A   UUGAAA UAACAACAGCGGAAGAA  UUCUUUCGUG A UC CU G GGAAG A   |||||| |||||||||||||||||  |||||||||| | || || | ||||| C   AACUUU AUUGUUGUCGCCUUCUU  AAGAAGGCAC U AG GA C CCUUC U UC      C                 GG          G U  A  G A     U |
Stem-loop sequence | UUGAAAAUAACAACAGCGGAAGAAGGUUCUUUCGUGGAUUCCUGCGGAAGAACUUCUUCCACGAGAGAUUGCACGGAAGAAGGUUCUUCCGCUGUUGUUACUUUCAACU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006590109.1 |
|
2.5 | PREDICTED: Glycine max putative UPF0481 protein At3g02645 (LOC102667685), mRNA | putative UPF0481 protein At3g02645(LOC102667685) | coding protein | psRNATarget |