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BaseInfo

ncRNA ID novel_gma_miR2221
Species Glycine max
Class miRNA
Genome position Chr20:15081173-15081218 [-]
Reference genome Glycine_max_v2.0
Source SRR1451653
Length 22
Mature sequence(if miRNA) 25 - UUUGAGGAUGAUAAGUUGAACU - 46
Stem-loop(if miRNA) --    A    GAU        CU
  UUUG GGAU   AAGUUGAA  A
  |||| ||||   ||||||||
  GAAC CCUG   UUCGACUU  A
CG    C    --U        CG
Stem-loop sequence UUUGAGGAUGAUAAGUUGAACUAAGCUUCAGCUUUGUCCCCAAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775144.1
ncRNA:22   UCAAGUUGAAUAGUAGGAGUUU   1
  ||||||=|||||||||||||||
targets:1093   AGUUCAGCUUAUCAUCCUCAAA   1114

1.0 PREDICTED: Glycine max uncharacterized LOC106798545 (LOC106798545), mRNA uncharacterized LOC106798545(LOC106798545) coding protein psRNATarget
XM_006579080.1
ncRNA:22   UCAAGUUGAAUAGUAGGAGUUU   1
  =*||||*|||||||||||||=|
targets:202   GCUUCACCUUAUCAUCCUCAGA   223

2.5 PREDICTED: Glycine max uncharacterized LOC100805432 (LOC100805432), mRNA uncharacterized LOC100805432(LOC100805432) coding protein psRNATarget
XM_006590045.1
ncRNA:22   UCAAGUUGAAUAGUAGGAGUUU   1
  =*||||*|||||||||||||*|
targets:877   GCUUCACCUUAUCAUCCUCAUA   898

2.5 PREDICTED: Glycine max uncharacterized LOC102662088 (LOC102662088), mRNA uncharacterized LOC102662088(LOC102662088) coding protein psRNATarget
XM_014770972.1
ncRNA:22   UCAAGUUGAAUAGUAGGAGUUU   1
  |||*||=|*|||||||||||||
targets:1501   AGUACAGCCUAUCAUCCUCAAA   1522

3.0 PREDICTED: Glycine max uncharacterized LOC106797151 (LOC106797151), mRNA uncharacterized LOC106797151(LOC106797151) coding protein psRNATarget