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BaseInfo

ncRNA ID novel_gma_miR2220
Species Glycine max
Class miRNA
Genome position Chr20:19565774-19565860 [-]
Reference genome Glycine_max_v2.0
Source SRR1451653
Length 21
Mature sequence(if miRNA) 1 - UUCCAAAAAACUGAUGUUAAC - 21
Stem-loop(if miRNA) --              CCA   A            -----   CAA
  UAACAUCGGUUUUU   AAA AUCGAUGUUAAC     UGU   C
  ||||||||||||||   ||| ||||||||||||     |||
  AUUGUAGUCAAAAA   UUU UAGCUACAAUUG     ACA   A
CA              ACC   A            CAUAC   AUU
Stem-loop sequence UAACAUCGGUUUUUCCAAAAAAUCGAUGUUAACUGUCAACAUUAACACAUACGUUAACAUCGAUAUUUCCAAAAAACUGAUGUUAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014765572.1
ncRNA:21   CAAUUGUAGUCAAAAAACCUU   1
  *|*|||||||||||||*||||
targets:132   AUGAACAUCAGUUUUUGGGAA   152

2.5 PREDICTED: Glycine max glycerophosphodiester phosphodiesterase GDPDL6 (LOC100794640), mRNA glycerophosphodiester phosphodiesterase GDPDL6(LOC100794640) coding protein psRNATarget