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BaseInfo

ncRNA ID novel_gma_miR2211
Species Glycine max
Class miRNA
Genome position Chr10:39384908-39384992 [+]
Reference genome Glycine_max_v2.0
Source SRR1451653
Length 22
Mature sequence(if miRNA) 1 - CAAAUGUUUGGACCAAUAGAUU - 22
Stem-loop(if miRNA) --            -CCA      U      -U       UGG
  CAAAUGUUUGGA    AUAGAU UUAUUU  AAGACUU   C
  ||||||||||||    |||||| ||||||  |||||||   A
  GUUUACAGAUCU    UAUUUA AGUAAG  UUCUGAA   U
AA            UAUG      U      UU       UUU
Stem-loop sequence CAAAUGUUUGGACCAAUAGAUUUUAUUUUAAGACUUUGGCAUUUUAAGUCUUUUGAAUGAUAUUUAUGUAUUCUAGACAUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006580094.2
ncRNA:22   UUAGAUAACCAGGUUUGUAAAC   1
  |=**||||||||||||||*|||
targets:1246   AGGAUAUUGGUCCAAACAAUUG   1267

2.5 PREDICTED: Glycine max protochlorophyllide-dependent translocon component 52, chloroplastic (LOC100784940), mRNA protochlorophyllide-dependent translocon component 52, chloroplastic(LOC100784940) coding protein psRNATarget
AK287007.1
ncRNA:22   UUAGAUAACCAGGUUUGUAAAC   1
  |=**||||||||||||||*|||
targets:1253   AGGAUAUUGGUCCAAACAAUUG   1274

2.5 Glycine max cDNA, clone: GMFL01-42-A08 NA coding protein psRNATarget