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BaseInfo

ncRNA ID novel_gma_miR2196
Species Glycine max
Class miRNA
Genome position Chr18:57333387-57333471 [-]
Reference genome Glycine_max_v2.0
Source SRR1451653;SRR1451655;SRR1294484;SRR1451664;SRR2968974;SRR835759;SRR835765;SRR835770;SRR835771;SRR1451610;SRR1451613;SRR1451616;SRR1451623;SRR1451625
Length 22
Mature sequence(if miRNA) 64 - AACCCUCAAAGGCUUCCACUAC - 85
Stem-loop(if miRNA) --AAC        GCU          CAUA      UCCA    G
     CCUCAAAG   UCCACUACUU    UUUCAU    GUGA A
     ||||||||   ||||||||||    ||||||    |||| A
     GGAGUUUC   AGGUGGUGAA    AAAGUA    CACU U
UGUUC        --A          ----      CAAA    A
Stem-loop sequence AACCCUCAAAGGCUUCCACUACUUCAUAUUUCAUUCCAGUGAGAAUAUCACAAACAUGAAAAAGUGGUGGAACUUUGAGGCUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550815.3
ncRNA:22   CAUCACCUUCGGAAACUCCCAA   1
  |||*|||||||||||||||||*
targets:778   GUAUUGGAAGCCUUUGAGGGUG   799

2.0 PREDICTED: Glycine max scarecrow-like protein 21 (LOC100813548), mRNA scarecrow-like protein 21(LOC100813548) coding protein psRNATarget
XM_003525617.3
ncRNA:22   CAUCACCUUCGGAAACUCCCAA   1
  *||*|||||||||||||||||*
targets:953   AUAUUGGAAGCCUUUGAGGGUG   974

2.0 PREDICTED: Glycine max scarecrow-like protein 21 (LOC100815959), mRNA scarecrow-like protein 21(LOC100815959) coding protein psRNATarget
XM_003549590.3
ncRNA:22   CA-UCACCUUCGGAAACUCCCAA   1
  ||-||*|||*||||||||||||*
targets:657   GUGAGGGGACGCCUUUGAGGGUG   679

3.0 PREDICTED: Glycine max uncharacterized LOC100792613 (LOC100792613), mRNA uncharacterized LOC100792613(LOC100792613) coding protein psRNATarget