ncRNA ID | novel_gma_miR2196 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:57333387-57333471 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451653;SRR1451655;SRR1294484;SRR1451664;SRR2968974;SRR835759;SRR835765;SRR835770;SRR835771;SRR1451610;SRR1451613;SRR1451616;SRR1451623;SRR1451625 |
Length | 22 |
Mature sequence(if miRNA) | 64 - AACCCUCAAAGGCUUCCACUAC - 85 |
Stem-loop(if miRNA) |
--AAC        GCU          CAUA      UCCA    G      CCUCAAAG   UCCACUACUU    UUUCAU    GUGA A      ||||||||   ||||||||||    ||||||    |||| A      GGAGUUUC   AGGUGGUGAA    AAAGUA    CACU U UGUUC        --A          ----      CAAA    A |
Stem-loop sequence | AACCCUCAAAGGCUUCCACUACUUCAUAUUUCAUUCCAGUGAGAAUAUCACAAACAUGAAAAAGUGGUGGAACUUUGAGGCUUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003550815.3 |
|
2.0 | PREDICTED: Glycine max scarecrow-like protein 21 (LOC100813548), mRNA | scarecrow-like protein 21(LOC100813548) | coding protein | psRNATarget | |||||||||
XM_003525617.3 |
|
2.0 | PREDICTED: Glycine max scarecrow-like protein 21 (LOC100815959), mRNA | scarecrow-like protein 21(LOC100815959) | coding protein | psRNATarget | |||||||||
XM_003549590.3 |
|
3.0 | PREDICTED: Glycine max uncharacterized LOC100792613 (LOC100792613), mRNA | uncharacterized LOC100792613(LOC100792613) | coding protein | psRNATarget |