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BaseInfo

ncRNA ID novel_gma_miR2167
Species Glycine max
Class miRNA
Genome position Chr14:19283793-19283953 [+]
Reference genome Glycine_max_v2.0
Source SRR1451653
Length 24
Mature sequence(if miRNA) 1 - AAAUUUUUAAUUUUGUUUAUGCUU - 24
Stem-loop(if miRNA) --               -  UA      -     UUUUCUUUUAAUCCAAUUGAACCCUAAAUCAAAUGUAUUCAUUAAAG
  AAAUUUUUAAUUUUG UU  UGCUUU AUUUC                                               G
  ||||||||||||||| ||  |||||| |||||                                               U
  UUUAGAAGUUAAAAC AG  ACGAAA AUCUU                                               A
UU               C  GG      A     UUAGAGAUAUAAAGAAUGAAAUAUUAAUUAAUUUAGUAAAAAAUAUC
Stem-loop sequence AAAUUUUUAAUUUUGUUUAUGCUUUAUUUCUUUUCUUUUAAUCCAAUUGAACCCUAAAUCAAAUGUAUUCAUUAAAGGUACUAUAAAAAAUGAUUUAAUUAAUUAUAAAGUAAGAAAUAUAGAGAUUUUCUAAAAAGCAGGGACCAAAAUUGAAGAUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772823.1
ncRNA:24   UUCGUAUUUGUUUUAAUUUUUAAA   1
  ***=|||||*||||||||||||||
targets:1003   UUUUAUAAAAAAAAUUAAAAAUUU   1026

1.0 PREDICTED: Glycine max probable S-adenosylmethionine carrier 2, chloroplastic (LOC100803828), mRNA probable S-adenosylmethionine carrier 2, chloroplastic(LOC100803828) coding protein psRNATarget
BT097912.1
ncRNA:24   UUCGUAUUUGUUUUAAUUUUUAAA   1
  |||*=*||||||||||=|||||||
targets:189   AAGAGAAAACAAAAUUGAAAAUUU   212

2.5 Soybean clone JCVI-FLGm-11H2 unknown mRNA NA coding protein psRNATarget
XM_006584432.2
ncRNA:23   UCGUAUUUGUUUUAAUUUUUAAA   1
  =|||*|||*|||||||||||||*
targets:1   GGCAAAAAAAAAAUUAAAAAUUA   23

3.0 PREDICTED: Glycine max uncharacterized LOC100306412 (LOC100306412), transcript variant X1, mRNA uncharacterized LOC100306412(LOC100306412) coding protein psRNATarget