ncRNA ID | novel_gma_miR2167 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr14:19283793-19283953 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451653 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAAUUUUUAAUUUUGUUUAUGCUU - 24 |
Stem-loop(if miRNA) |
--               -  UA      -     UUUUCUUUUAAUCCAAUUGAACCCUAAAUCAAAUGUAUUCAUUAAAG   AAAUUUUUAAUUUUG UU  UGCUUU AUUUC                                               G   ||||||||||||||| ||  |||||| |||||                                               U   UUUAGAAGUUAAAAC AG  ACGAAA AUCUU                                               A UU               C  GG      A     UUAGAGAUAUAAAGAAUGAAAUAUUAAUUAAUUUAGUAAAAAAUAUC |
Stem-loop sequence | AAAUUUUUAAUUUUGUUUAUGCUUUAUUUCUUUUCUUUUAAUCCAAUUGAACCCUAAAUCAAAUGUAUUCAUUAAAGGUACUAUAAAAAAUGAUUUAAUUAAUUAUAAAGUAAGAAAUAUAGAGAUUUUCUAAAAAGCAGGGACCAAAAUUGAAGAUUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014772823.1 |
|
1.0 | PREDICTED: Glycine max probable S-adenosylmethionine carrier 2, chloroplastic (LOC100803828), mRNA | probable S-adenosylmethionine carrier 2, chloroplastic(LOC100803828) | coding protein | psRNATarget | |||||||||
BT097912.1 |
|
2.5 | Soybean clone JCVI-FLGm-11H2 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_006584432.2 |
|
3.0 | PREDICTED: Glycine max uncharacterized LOC100306412 (LOC100306412), transcript variant X1, mRNA | uncharacterized LOC100306412(LOC100306412) | coding protein | psRNATarget |