| ncRNA ID | ath-miR390a-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:16061954-16062060 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 18 - AAGCUCAGGAGGGAUAGCGCC - 38 |
| Stem-loop(if miRNA) |
-- AU U A G --U - C A GUAG AGAAGA C GU AAGCUCAGGA GGAUAGCGCCA GAU GAU AC U |||| |||||| | || |||||||||| ||||||||||| ||| ||| || CAUC UCUUCU G UA UUUGAGUCCU CCUAUCGCGGU UUA CUA UG U AU CG U C A UUU U U C |
| Stem-loop sequence | GUAGAGAAGAAUCUGUAAAGCUCAGGAGGGAUAGCGCCAUGAUGAUCACAUUCGUUAUCUAUUUUUUGGCGCUAUCCAUCCUGAGUUUCAUUGGCUCUUCUUACUAC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AY085124.1 |
|
3.0 | Arabidopsis thaliana clone 13209 mRNA, complete sequence | NA | coding protein | psRNATarget | |||||||||
| BX825313.1 |
|
3.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL28ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |
| 1 | PMID:15608278
"ASRP: the Arabidopsis Small RNA Project Database"; Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD; Nucleic Acids Res. 33:D637-D640(2005). |
| 2 | PMID:15632092
"Computational prediction of miRNAs in Arabidopsis thaliana"; Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V; Genome Res. 15:78-91(2005). |
| 3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |