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BaseInfo

ncRNA ID novel_gma_miR2152
Species Glycine max
Class miRNA
Genome position Chr1:2543891-2543974 [-]
Reference genome Glycine_max_v2.0
Source SRR1451653
Length 21
Mature sequence(if miRNA) 1 - UCCAGGUAAAACUCCAAUUCU - 21
Stem-loop(if miRNA) --       A   A    UU        CA    UCUUU    C
  AAUUGGA UUU ACUU  GUAAUCUG  UAAU     AAUG A
  ||||||| ||| ||||  ||||||||  ||||     ||||
  UUAACCU AAA UGGA  UAUUAGAC  AUUA     UUAC A
UC       C   A    CC        AC    ----U    A
Stem-loop sequence AAUUGGAAUUUAACUUUUGUAAUCUGCAUAAUUCUUUAAUGCAAACAUUUAUUACACAGAUUAUCCAGGUAAAACUCCAAUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003541738.3
ncRNA:21   UCUUAACCUCAAAAUGGACCU   1
  *||*||||||||||||||||*
targets:1947   CGAUUUGGAGUUUUACCUGGC   1967

2.0 PREDICTED: Glycine max uncharacterized LOC100818960 (LOC100818960), mRNA uncharacterized LOC100818960(LOC100818960) coding protein psRNATarget
XM_006583153.2
ncRNA:21   UCUUAACCUCAAAAUGGACCU   1
  |*|||*||||||||||=||||
targets:758   ACAAUGGGAGUUUUACUUGGA   778

2.5 PREDICTED: Glycine max protein yippee-like At4g27745 (LOC100788878), transcript variant X2, mRNA protein yippee-like At4g27745(LOC100788878) coding protein psRNATarget
XM_006583151.2
ncRNA:21   UCUUAACCUCAAAAUGGACCU   1
  |*|||*||||||||||=||||
targets:892   ACAAUGGGAGUUUUACUUGGA   912

2.5 PREDICTED: Glycine max protein yippee-like At4g27745 (LOC100788878), transcript variant X1, mRNA protein yippee-like At4g27745(LOC100788878) coding protein psRNATarget