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BaseInfo

ncRNA ID novel_gma_miR2100
Species Glycine max
Class miRNA
Genome position Chr11:17804803-17804889 [+]
Reference genome Glycine_max_v2.0
Source SRR1294482;SRR1295517;SRR1295525;SRR1295531;SRR1451615;SRR1451618
Length 24
Mature sequence(if miRNA) 1 - GUGAGAUUUUGAGGUUUAGAAAGC - 24
Stem-loop(if miRNA) --G   G        GU      --   -  AA      G    UG
   UGA AUUUUGAG  UUAGAA  AGC CA  UUUGGG UUAG  G
   ||| ||||||||  ||||||  ||| ||  |||||| ||||  A
   AUU UAAGAUUU  GAUCUU  UUG GU  AAAUUU AGUU  A
UUA   G        --      AG   A  -G      G    UA
Stem-loop sequence GUGAGAUUUUGAGGUUUAGAAAGCCAAAUUUGGGGUUAGUGGAAAUUUGAGUUUAAAGUGAGUUGAUUCUAGUUUAGAAUGUUAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006589122.2
ncRNA:24   CGAA----AGAUUUGGAGUUUUAGAGUG   1
  *|||----|||=||=||||||||||||*
targets:95   CCUUGGUCUCUGAAUCUCAAAAUCUCAA   122

3.0 PREDICTED: Glycine max PRA1 family protein E-like (LOC100790708), mRNA PRA1 family protein E-like(LOC100790708) coding protein psRNATarget