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BaseInfo

ncRNA ID novel_gma_miR2099
Species Glycine max
Class miRNA
Genome position Chr5:20415675-20415723 [+]
Reference genome Glycine_max_v2.0
Source SRR1451653;SRR1451654;SRR1451662;SRR1451663;SRR1451618
Length 21
Mature sequence(if miRNA) 29 - UUCUUAAUUAUUCUGAGGCCU - 49
Stem-loop(if miRNA) --    A           UUCAAC
  GUUU GGAAUAAUUAA      C
  |||| |||||||||||      C
  CGGA UCUUAUUAAUU      C
UC    G           CUUCCC
Stem-loop sequence GUUUAGGAAUAAUUAAUUCAACCCCCCCUUCUUAAUUAUUCUGAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014776666.1
ncRNA:21   UCCGGAGUCUUAUUAAUUCUU   1
  **||||||||||*|||||||*
targets:19   UAGCCUCAGAAUUAUUAAGAU   39

2.5 PREDICTED: Glycine max probable cyclic nucleotide-gated ion channel 17 (LOC100810967), transcript variant X2, mRNA probable cyclic nucleotide-gated ion channel 17(LOC100810967) coding protein psRNATarget
XM_006582039.2
ncRNA:21   UCCGGAGUCUUAUUAAUUCUU   1
  **||||||||||*|||||||*
targets:19   UAGCCUCAGAAUUAUUAAGAU   39

2.5 PREDICTED: Glycine max probable cyclic nucleotide-gated ion channel 17 (LOC100810967), transcript variant X1, mRNA probable cyclic nucleotide-gated ion channel 17(LOC100810967) coding protein psRNATarget