Search result

BaseInfo

ncRNA ID	novel_gma_miR2098
Species	Glycine max
Class	miRNA
Genome position	Chr5:19171742-19171862 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451653
Length	22
Mature sequence(if miRNA)	1 - CUCCAUUGGAGUUUGUAGGCCU - 22
Stem-loop(if miRNA)	--    A       -U    GG    --GGA        A  AA  GAG   U     UCUUGA   CUCC UUGGAGU  UGUA  CCUU     UCUUCUUC UC  UG   UCC UUGCU      A   |||| |||||||  ||||  ||||     |||||||| ||  ||   ||| |||||   GAGG AACUUCA  GCAU  GGAG     AGAAGAAG AG  AU   AGG AACGG      U AA    -       CC    -A    AGUUG        A  AG  --A   U     UAAUUU
Stem-loop sequence	CUCCAUUGGAGUUUGUAGGCCUUGGAUCUUCUUCAUCAAUGGAGUCCUUUGCUUCUUGAAUUUUAAUGGCAAUGGAAUAGAGAAGAAGAAGAGUUGAGAGGAUACGCCACUUCAAGGAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT095722.1	ncRNA:22   UCCGGAUGUUUGAGGUUACCUC   1   ||||||||||=||||||||||| targets:105   AGGCCUACAAGCUCCAAUGGAG   126 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-15I19 unknown mRNA	NA	coding protein	psRNATarget
XM_006587612.2	ncRNA:22   UCCGGAUGUUUGAGGUUACCUC   1   ||||||||||=||||||||||| targets:73   AGGCCUACAAGCUCCAAUGGAG   94 Target Full Sequence	1.5	PREDICTED: Glycine max maltose excess protein 1, chloroplastic-like (LOC102668505), transcript variant X2, mRNA	maltose excess protein 1, chloroplastic-like(LOC102668505)	coding protein	psRNATarget
XM_006587611.2	ncRNA:22   UCCGGAUGUUUGAGGUUACCUC   1   ||||||||||=||||||||||| targets:78   AGGCCUACAAGCUCCAAUGGAG   99 Target Full Sequence	1.5	PREDICTED: Glycine max maltose excess protein 1, chloroplastic-like (LOC102668505), transcript variant X1, mRNA	maltose excess protein 1, chloroplastic-like(LOC102668505)	coding protein	psRNATarget
AK286453.1	ncRNA:22   UCCGGAUGUUUGAGGUUACCUC   1   |||||||=||=||||||||||| targets:1559   AGGCCUAUAAGCUCCAAUGGAG   1580 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-28-L19	NA	coding protein	psRNATarget